PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6hwiA_

Fold library id	PDB Header	Molecule	Title
c6hwiA_	7.20	PDB header: viral protein	Chain: A: PDB Molecule: gag-pro-pol polyprotein;

Links to external resources
Added to library: Sat Dec 8 08:28:02 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G F D F A V I K E L K T A A S Q Y G A T A P Y T L A I V E S V A D N W L T P T D W N T L V R A V L S G G D H L L W K S E F F E N C R D T A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T S
T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R N Q Q A G N G W D F D M L T G S G N Y S S T D A Q M Q Y D P G L F A Q I Q A A A T K A W R K L P V K G D P G A S L T G V K Q G P D E P F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S G G G S S S S S
S T T
S
S
S
T T T T S S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200

Sequence D F V H R L I T T A G R I F G S A E A G V D Y V K Q L A Y E N A N P A C Q A A I R P Y R K K T D L T G Y I R L C S D I G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S T T
S S
S S
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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All images and data generated by Phyre2 are free to use in any publication with acknowledgement
Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	F	D	F	A	V	I	K	E	L	K	T	A	A	S	Q	Y	G	A	T	A	P	Y	T	L	A	I	V	E	S	V	A	D	N	W	L	T	P	T	D	W	N	T	L	V	R	A	V	L	S	G	G	D	H	L	L	W	K	S	E	F	F	E	N	C	R	D	T	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T	S											T	T	S															T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	N	Q	Q	A	G	N	G	W	D	F	D	M	L	T	G	S	G	N	Y	S	S	T	D	A	Q	M	Q	Y	D	P	G	L	F	A	Q	I	Q	A	A	A	T	K	A	W	R	K	L	P	V	K	G	D	P	G	A	S	L	T	G	V	K	Q	G	P	D	E	P	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T					S	S	G	G	G	S	S	S	S	S		S	T					T																				S				S		S		T	T	T	T	S	S				S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Sequence	D	F	V	H	R	L	I	T	T	A	G	R	I	F	G	S	A	E	A	G	V	D	Y	V	K	Q	L	A	Y	E	N	A	N	P	A	C	Q	A	A	I	R	P	Y	R	K	K	T	D	L	T	G	Y	I	R	L	C	S	D	I	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															S	S	S	T	T		S											S													S	S										S