PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6gapB_

Fold library id	PDB Header	Molecule	Title
c6gapB_	2.15	PDB header: viral protein	Chain: B: PDB Molecule: outer capsid protein sigma-1;

Links to external resources
Added to library: Sat Apr 28 08:23:03 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G L E S R V S A L E K T S Q I H S D T I L R I T Q G L D D A N K R I I A L E Q S R D D L V A S V S D A Q L A I S R L E S S I G A L Q T V V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G L D S S V T Q L G A R V G Q L E T G L A E L R V D H D N L V A R V D T A E R N I G S L T T E L S T L T L R V T S I Q A D F E S R I S T L E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R T A V T S A G A P L S I R N N R M T M G L N D G L T L S G N N L A I R L P G N T G L N I Q N G G L Q F R F N T D Q F Q I V N N N L T L K T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T T T
T T T T
S
S S T T
T T T T T
G

. . . .

Sequence T V F D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	L	E	S	R	V	S	A	L	E	K	T	S	Q	I	H	S	D	T	I	L	R	I	T	Q	G	L	D	D	A	N	K	R	I	I	A	L	E	Q	S	R	D	D	L	V	A	S	V	S	D	A	Q	L	A	I	S	R	L	E	S	S	I	G	A	L	Q	T	V	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	L	D	S	S	V	T	Q	L	G	A	R	V	G	Q	L	E	T	G	L	A	E	L	R	V	D	H	D	N	L	V	A	R	V	D	T	A	E	R	N	I	G	S	L	T	T	E	L	S	T	L	T	L	R	V	T	S	I	Q	A	D	F	E	S	R	I	S	T	L	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	T	A	V	T	S	A	G	A	P	L	S	I	R	N	N	R	M	T	M	G	L	N	D	G	L	T	L	S	G	N	N	L	A	I	R	L	P	G	N	T	G	L	N	I	Q	N	G	G	L	Q	F	R	F	N	T	D	Q	F	Q	I	V	N	N	N	L	T	L	K	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S						T	T					T	T								T	T					T	T								S		S	S					T	T								T	T	T					T	T						G
	.	.	.	.
Sequence	T	V	F	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	G	G	T