PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6gaoC_

Fold library id	PDB Header	Molecule	Title
c6gaoC_	2.10	PDB header: viral protein	Chain: C: PDB Molecule: outer capsid protein sigma-1;

Links to external resources
Added to library: Sat Apr 28 08:28:34 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M E E I K K Q V Q V N V D D I R A A N I K L D G L G R Q I A D I S N S I S T I E S R L G E M D N R L V G I S S Q V T Q L S N S V S Q N T Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence I S S L G D R I N A V E P R V D S L D T V T S N L T G R T S T L E A D V G S L R T E L A A L T T R V T T E V T R L D G L I N S G Q N S I G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L S T R L S N V E T S M V T T A G R G L Q K N G N T L N V I V G N G M W F N S S N Q L Q L D L S G Q S K G V G F V G T G M V V K I D T N Y F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T T T T
T T
T T S
G G G T S S T T
T T T

. . . . . . . . . 220 .

Sequence A Y N S N G E I T L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	E	E	I	K	K	Q	V	Q	V	N	V	D	D	I	R	A	A	N	I	K	L	D	G	L	G	R	Q	I	A	D	I	S	N	S	I	S	T	I	E	S	R	L	G	E	M	D	N	R	L	V	G	I	S	S	Q	V	T	Q	L	S	N	S	V	S	Q	N	T	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	I	S	S	L	G	D	R	I	N	A	V	E	P	R	V	D	S	L	D	T	V	T	S	N	L	T	G	R	T	S	T	L	E	A	D	V	G	S	L	R	T	E	L	A	A	L	T	T	R	V	T	T	E	V	T	R	L	D	G	L	I	N	S	G	Q	N	S	I	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	S	T	R	L	S	N	V	E	T	S	M	V	T	T	A	G	R	G	L	Q	K	N	G	N	T	L	N	V	I	V	G	N	G	M	W	F	N	S	S	N	Q	L	Q	L	D	L	S	G	Q	S	K	G	V	G	F	V	G	T	G	M	V	V	K	I	D	T	N	Y	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S			S			T	T					T	T								T	T					T	T	S							G	G	G	T	S	S					T	T								T	T	T
	.	.	.	.	.	.	.	.	.	220	.
Sequence	A	Y	N	S	N	G	E	I	T	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	S