PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6fsfA_

Fold library id	PDB Header	Molecule	Title
c6fsfA_	2.20	PDB header: endocytosis	Chain: A: PDB Molecule: gtpase-activating protein bem3;

Links to external resources
Added to library: Sat May 5 08:38:55 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D I P L F V Q P E D F G T I Q I E V L S T L Y R D N E D D L S I L I A I I D R K S G K E M F K F S K S I H K V R E L D V Y M K S H V P D L P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
G G G G G G
T T S
T T T
T T S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L P T L P D R Q L F Q T L S P T K V D T R K N I L N Q Y Y T S I F S V P E F P K N V G L K I A Q F I S T D T V M T P V K D G S L L L R R P N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T S
T T
S
T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S T W R V R Y G I L R D D V L Q L F D K N Q L T E T I K L R Q S S I E L I P N L P E D R F G T R N G F L I T E H S T K Y Y I C T E T S K E R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S S S S S S
S S S
T T
S
S S

. . . . . . . .

Sequence E L W L S A F S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	I	P	L	F	V	Q	P	E	D	F	G	T	I	Q	I	E	V	L	S	T	L	Y	R	D	N	E	D	D	L	S	I	L	I	A	I	I	D	R	K	S	G	K	E	M	F	K	F	S	K	S	I	H	K	V	R	E	L	D	V	Y	M	K	S	H	V	P	D	L	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S		G	G	G	G	G	G													T	T	S											T	T	T																										T	T	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	P	T	L	P	D	R	Q	L	F	Q	T	L	S	P	T	K	V	D	T	R	K	N	I	L	N	Q	Y	Y	T	S	I	F	S	V	P	E	F	P	K	N	V	G	L	K	I	A	Q	F	I	S	T	D	T	V	M	T	P	V	K	D	G	S	L	L	L	R	R	P	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G	G	T	S																					T	T		S															T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	T	W	R	V	R	Y	G	I	L	R	D	D	V	L	Q	L	F	D	K	N	Q	L	T	E	T	I	K	L	R	Q	S	S	I	E	L	I	P	N	L	P	E	D	R	F	G	T	R	N	G	F	L	I	T	E	H	S	T	K	Y	Y	I	C	T	E	T	S	K	E	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T						S	S	S	S							S	S	S								S	S	S			T	T				S																S	S
	.	.	.	.	.	.	.	.
Sequence	E	L	W	L	S	A	F	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)