PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6em34_

Fold library id	PDB Header	Molecule	Title
c6em34_	3.20	PDB header: ribosome	Chain: 4: PDB Molecule: ribosomal rna-processing protein 1;

Links to external resources
Added to library: Sat Dec 30 08:27:44 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N F V K Q L S S N N R K T R V N A L E A L K K Y L T A K Q F K E N K Q I E F N K L W K G L Y Y A M W F S D R P R P Q Q R L A N E L G E L H G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S S
S
T T S
S S
T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L Y F D P K D N S T A D E L T T N D K A F I K F S R G F W K V M C F E W F N I D R Y R L D K Y L L L I R R V L F S Q L K Y L Q S R N W D K K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
G G G
S S
S
S S S T T S S S
T T T T S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L V D E Y I K K V L R W L P L S G S P K V Y T G I P I H I V D I L L D E W E R L L A K K T P L A D V I A I F Q D I V A D Y N N S K V L R E K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S
T T S
T T T T T T T T
T
S S

. . . . . . . . . 220

Sequence I K E D L F S D T R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	F	V	K	Q	L	S	S	N	N	R	K	T	R	V	N	A	L	E	A	L	K	K	Y	L	T	A	K	Q	F	K	E	N	K	Q	I	E	F	N	K	L	W	K	G	L	Y	Y	A	M	W	F	S	D	R	P	R	P	Q	Q	R	L	A	N	E	L	G	E	L	H	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	S	S		S																			T	T	S		S	S																		T			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	Y	F	D	P	K	D	N	S	T	A	D	E	L	T	T	N	D	K	A	F	I	K	F	S	R	G	F	W	K	V	M	C	F	E	W	F	N	I	D	R	Y	R	L	D	K	Y	L	L	L	I	R	R	V	L	F	S	Q	L	K	Y	L	Q	S	R	N	W	D	K	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T		G	G	G			S	S			S		S	S	S	T	T																S	S	S			T	T	T																		T	S		S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	V	D	E	Y	I	K	K	V	L	R	W	L	P	L	S	G	S	P	K	V	Y	T	G	I	P	I	H	I	V	D	I	L	L	D	E	W	E	R	L	L	A	K	K	T	P	L	A	D	V	I	A	I	F	Q	D	I	V	A	D	Y	N	N	S	K	V	L	R	E	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T	T	T			S		T	T	S		T										T	T	T	T	T	T	T							T																S	S
	.	.	.	.	.	.	.	.	.	220
Sequence	I	K	E	D	L	F	S	D	T	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T