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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c6e9fA_

Fold library idPDB HeaderMoleculeTitle
c6e9fA_3.30PDB header: rna binding protein/rnaChain: A: PDB Molecule: escas13d;


Added to library: Sat Oct 6 08:29:24 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TKSMAKAAGVKSVFAVGNTVYMTSFGRGNDAVLEQKIVDTSHEPLNIDDPAYQLNVVTMNGYSVTGHRGE
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Known secondary structure (DSSP)


TB



TT


SSS

TT


SS
S
SS
SSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence TVSAVTDNPLRRFNGRKPEQSVPTDMLCLKPTLEKKFFGKEFDDNIHIQLIYNILDIEKILAVYSTNAIY
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Known secondary structure (DSSP)




STTTT
S









TTS
BSS

SBSTTTTTGGGTTTTSSTTTTTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence ALNNMSADENIENSDFFMKRTTDETFDDFEKKKESTNSREKADFDAFEKFIGNYRLAYFADAFYVNKKAK
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Known secondary structure (DSSP) TTS


S




SSTT

TTS
STTTGGGSS

STTS
SGGGGG




 .........220.........230.........240.........250.........260.........270.........280
Sequence NVLREDKELYSVLTLIGKLAHWCVASEEGRAEFWLYKLDELKDDFKNVLDVVYNRPVEEINNRFIENNKV
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Known secondary structure (DSSP)


TTT



STTTT
GGGGGGS
TTTTTTTT
 .........290.........300.........310.........320.........330.........340.........350
Sequence NIQILGSVYKNTDIAELVRSYYEFLITKKYKNMGFSIKKLRESMLEGKGYADKEYDSVRNKLYQMTDFIL
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Known secondary structure (DSSP)
SS
TT
SS


SS
STTSTT
SSGGGGT
 .........360.........370.........380.........390.........400.........410.........420
Sequence YTGYINEDSDRADDLVNTLRSSLKEDDKTTVYCKEADYLWKKYRESIREVADALDGDNIKKLSKSNIEIQ
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Known secondary structure (DSSP) T
T

SSSTTGGGTTTSSTTTTS




 .........430.........440.........450.........460.........470.........480.........490
Sequence EDKLRKCFISYADSVSEFTKLIYLLTRFLSGKEINDLVTTLINKFDNIRSFLEIMDELGLDRTFTAEYSF
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Known secondary structure (DSSP)
SSTGGG



SSSS
TTSS
TTTSSTGGGTTTTTT



B
TTTTT
 .........500.........510.........520.........530.........540.........550.........560
Sequence FEGSTKYLAELVELNSFVKSCSFDINAKRTMYRDALDILGIESDKTEEDIEKMIDNILQIDKKLKKNNGL
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Known secondary structure (DSSP) STTTT






STTT


SS
GGGT






SS
T
 .........570.........580.........590.........600.........610.........620.........630
Sequence RNFIASNVIDSNRFKYLVRYGNPKKIRETAKCKPAVRFVLNEIPDAQIERYYEACCPCSANKRREKLADM
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Known secondary structure (DSSP)
TTTS
GGGTTTTTT
TTSS
TTT



 .........640.........650.........660.........670.........680.........690.........700
Sequence IAEIKFENFSRTSEAEIKRKNQAIIRLYLTVMYIMLKNLVNVNARYVIAFHCVERDTKLYAESGLEVGNI
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Known secondary structure (DSSP) TT






TTSSTTTTT




S
 .........710.........720.........730.........740.........750.........760.........770
Sequence EKNKTNLTMAVMGVKLENGIIKTEFDKSFAENAANRYLRNARWYKLILDNLKKSERAVVNEFANTVCALN
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Known secondary structure (DSSP) SS
TTTTT

BSSSSB




STTTTS
SSSSTTSTT

TTTT
 .........780.........790.........800.........810.........820.........830.........840
Sequence AIRNININIKEIKEVENYFALYHYLIQKHLENRFADKKVERDTGDFISKLEEHKTYCKDFVKAYCTPFGY
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Known secondary structure (DSSP) TTTTTTTTTS

S


STTTS


SSS

TTSSGGGGS
 .........850.........860....
Sequence NLVRYKNLTIDGLFDKNYPGKDDS
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Known secondary structure (DSSP) STTSTTSS
SS







Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Accessibility Statement
Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Imperial College,
London
Michael Sternberg

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