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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c6e7aY_

Fold library idPDB HeaderMoleculeTitle
c6e7aY_4.20PDB header: dna binding protein/dna/rnaChain: Y: PDB Molecule: casx;


Added to library: Sat Feb 9 08:15:40 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence EKRINKIRKKLSADNATKPVSRSGPMKTLLVRVMTDDLKKRLEKRRKKPEVMPQVISNNAANNLRMLLDD
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Known secondary structure (DSSP)

SSTS


SS





B


STTSSS

SS





S
 .........80.........90.........100.........110.........120.........130.........140
Sequence YTKMKEAILQVYWQEFKDDHVGLMCKFAQPASKKIDQNKLKPEMDEKGYTNYFGRCNVAEHEKLILLAQL
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Known secondary structure (DSSP)
STS



S



B



S








BB


TTS


B





 .........150.........160.........170.........180.........190.........200.........210
Sequence KPEKDSDEAVTYSLGKFGQRALDFYSIHVTKESTHPVKPLAQIAGNRYASGPVGKALSDACMGTIASFLS
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Known secondary structure (DSSP)








SS
S









STTS
TTSTTSSS

SS


TTTTB
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence KYQDIIIEHQKVVKGNQKRLESLRENLEYPSVTLPPQPHTKEGVDAYNEVIARVRMWVNLNLWQKLDDAK
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Known secondary structure (DSSP) TT














SSSSGGGT

S

 .........290.........300.........310.........320.........330.........340.........350
Sequence PLLRLKGFPSFPVVERENEVDWWNTINEVKKLIDAKRDMGRVFWSGEKRNTILEGYNYLPNENDHKKREN
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TTTS





TSTT


TT
S
SS







 .........360.........370.........380.........390.........400.........410.........420
Sequence PKKPAKRQFGDLLLYLEKKYWGKVFDEAWERIDKKIAGLTSHIEREEARNAEDAQSKAVLTDWLRAKASF
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Known secondary structure (DSSP)



S

TTT


S
 .........430.........440.........450.........460.........470.........480.........490
Sequence VLERLKEMDEKEFYACEIQLQKWYGDLRGNPFAVEAENRVVDISGFSIGSDGHSIQYRNLLAWKYLENGK
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Known secondary structure (DSSP)

TTTTS

SSTTTS











SSSS
TT



B
SSS
 .........500.........510.........520.........530.........540.........550.........560
Sequence REFYLLMNYGKKGRIRFTDGTDIKKSGKWQGLLYGGGKAKVIDLTFDPDDEQLIILPLAFGTRQGREFIW
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Known secondary structure (DSSP) B





BSS









SS


B



STTS



B



SSS



B

TS
 .........570.........580.........590.........600.........610.........620.........630
Sequence NDLLSLETGLIKLANGRVIEKTIYNKKIGRDEPALFVALTFERREVVDPSNIKPVNLIGVARGENIPAVI
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Known secondary structure (DSSP)
SS

SSS
S






SSSSS




B






S


S



SSS

 .........640.........650.........660.........670.........680.........690.........700
Sequence ALTDPEGCPLRIGEGYKEKQRAIQAAKEVEQRRAGGYSRKFASKSRNLADDMVRNSARDLFYHAVTHDAV
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Known secondary structure (DSSP)

SS



BTTTTS




TTSTTTT

 .........710.........720.........730.........740.........750.........760.........770
Sequence LVFANLSRGFGFMTERQYTKMEDWLTAKLAYEGLTSKTYLSKTLAQYTSKTCSNCGFTITYDGMLVRLKK
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Known secondary structure (DSSP)


SS



TT
GGG

TTTS

TT


S
SS









S

SS
 .........780.........790.........800.........810.........820.........830.........840
Sequence TSDGWATTLNNKELKAEYQITYYNRYKRQTVEKESKWTKGRRDEALFLLKKRFSHRPVQEQFVCLDCGHE
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Known secondary structure (DSSP)


TTS








TTTT




SSTT

TS

TTTSSSS
SS

SSS

 .........850.........860.........870.........880.........890..
Sequence VHAAEQAALNIARSWLFLNSNSTEFKSYKSGKQPFVGAWQAFYKRRLKEVWK
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Known secondary structure (DSSP)
SSTT
TTTTTSTTTS

S
T


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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