PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6dk8B_

Fold library id	PDB Header	Molecule	Title
c6dk8B_	3.80	PDB header: signaling protein	Chain: B: PDB Molecule: rets (regulator of exopolysaccharide and type iii

Links to external resources
Added to library: Sat Mar 23 09:48:38 2019

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A E F L A K I S H E I R T P M N G V L G M T E L L L G T P L S A K Q R D Y V Q T I H S A G N E L L T L I N E I L D I S K L E S G Q I E L D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
T S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V Q F D L N A L I E D C L D I F R V K A E Q Q R I E L I S F T Q P Q V P R V I G G D P T R L R Q V V L S L L D N A F K Q T E E G E I L L V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T S S S
T T S
S
S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A L D D Q G E T P R L R I A V Q D S G H P F D A K E R E A L L T A E L H S G D F L S A S K L G S H L G L I I A R Q L V R L M G G E F G I Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
S S
T
T G G G G S
T T
T S S

. . . . . . . . . 220 . . . .

Sequence G S T T L S L T L P L D P Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	E	F	L	A	K	I	S	H	E	I	R	T	P	M	N	G	V	L	G	M	T	E	L	L	L	G	T	P	L	S	A	K	Q	R	D	Y	V	Q	T	I	H	S	A	G	N	E	L	L	T	L	I	N	E	I	L	D	I	S	K	L	E	S	G	Q	I	E	L	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T																			T	T	S																																				T	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	Q	F	D	L	N	A	L	I	E	D	C	L	D	I	F	R	V	K	A	E	Q	Q	R	I	E	L	I	S	F	T	Q	P	Q	V	P	R	V	I	G	G	D	P	T	R	L	R	Q	V	V	L	S	L	L	D	N	A	F	K	Q	T	E	E	G	E	I	L	L	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		T	T	T	T	S	S	S									T	T	S		S																									S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	L	D	D	Q	G	E	T	P	R	L	R	I	A	V	Q	D	S	G	H	P	F	D	A	K	E	R	E	A	L	L	T	A	E	L	H	S	G	D	F	L	S	A	S	K	L	G	S	H	L	G	L	I	I	A	R	Q	L	V	R	L	M	G	G	E	F	G	I	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S											S	S												T					T	G	G	G	G	S			T	T																T	S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	G	S	T	T	L	S	L	T	L	P	L	D	P	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										B