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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c6d2yA_

Fold library idPDB HeaderMoleculeTitle
c6d2yA_2.19PDB header: sugar binding proteinChain: A: PDB Molecule: pbsgbp-b lipoprotein;


Added to library: Sat Oct 19 08:26:45 2019
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence LASGTPTVYYIRPVDVASKDSLLTSASLQSTICLVGDNLKSIKGILFNDQAAVLNTSYITDHTLIVSVPN
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Known secondary structure (DSSP)


S

SSTT
S
S

STT
SGGGTT



GGGB
SS

S
 .........80.........90.........100.........110.........120.........130.........140
Sequence EIPSVVTDKXYXITASNDTIPYDFQVTISAPSVVSXSNEWAKAGEEVTITGDYFLDYDNYPLEIKVGKDY
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Known secondary structure (DSSP) S

SS

STT






S
TT

TT





SSS

TTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence TLPREAITSIEKTKITFTXPEDXPQHEDIVVSDKYGSTNAPFQYXDNRGXLFDFDTPNSVTNEVLGNSGW
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Known secondary structure (DSSP)

GGG
SS

TT

SSSTTTT

TT
SSS

TTT





BSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence HDRIIQSDDTSLSGNYXQIGNTGVTXAANGKWNDEFSFEYWAGNWANPETYASHPRLCDVADFSDWTNKS
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Known secondary structure (DSSP) S


STT
SSS
S
TT

B
TT



GGG
S

S
SSB

SSS

S

SSGGG
 .........290.........300.........310.........320.........330.........340.........350
Sequence LKFEXLIPADAGWGAGPXQIIFGSPSQISLGNAGVVDVNGVTLAGCNNTWFHAQNGWGRAIYXPWYSNSS
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Known secondary structure (DSSP)

TTS
B
SS

TTT

SS
TT
BBTTS
B


S
S
GGGSSS
B
B
TTB
SS
 .........360.........370.........380.........390.........400.........410.........420
Sequence ASLYDTGDKWVTVTIPLSDFNLEFDGNSATKSFSSINDFSSLNIFLIKGAYNDKSVLPDGVECTPIIKID
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Known secondary structure (DSSP) B

B

TT

GGG

B
TTSSB
SB


SGGGGS



BTTB

S




B


 ........
Sequence NIRVVPNK
Predicted secondary structure

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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg

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