PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6cnfS_

Fold library id	PDB Header	Molecule	Title
c6cnfS_	4.50	PDB header: transcription/dna	Chain: S: PDB Molecule: transcription factor tfiiib component b'',transcription

Links to external resources
Added to library: Sat Aug 25 08:36:29 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X X T A I Q L K L N P D G T M A I D E E T M V V D R H K N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S
S T T T
B
T T T T T
B
S G G G S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A S I E N E Y K E K V D E N P F A N L Y N Y G S Y G R G S Y T D P W T V E E M I K F Y K A L S M W G T D F N L I S Q L Y P Y R S R K Q V K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
T T S S
T T S S
S
T
S T T S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K F V N E E K K R P I L I E L A L R S K L P P N F D E Y C C E I K K N I G T V A D F N E K L I E L Q N E H K H H M K E I E E A K N T A K E E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T
S S

. . . . . . .

Sequence D Q T A Q R L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	X	T	A	I	Q	L	K	L	N	P	D	G	T	M	A	I	D	E	E	T	M	V	V	D	R	H	K	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S	S				S	S			S	T																								T	T						B				T	T	T	T	T		B		S	G	G	G	S			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	S	I	E	N	E	Y	K	E	K	V	D	E	N	P	F	A	N	L	Y	N	Y	G	S	Y	G	R	G	S	Y	T	D	P	W	T	V	E	E	M	I	K	F	Y	K	A	L	S	M	W	G	T	D	F	N	L	I	S	Q	L	Y	P	Y	R	S	R	K	Q	V	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T	S							T	T	S	S				T	T	S	S		S																						T				S	T	T					S	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	F	V	N	E	E	K	K	R	P	I	L	I	E	L	A	L	R	S	K	L	P	P	N	F	D	E	Y	C	C	E	I	K	K	N	I	G	T	V	A	D	F	N	E	K	L	I	E	L	Q	N	E	H	K	H	H	M	K	E	I	E	E	A	K	N	T	A	K	E	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			S				T	T	T								S	S
	.	.	.	.	.	.	.
Sequence	D	Q	T	A	Q	R	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T