PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6aytD_

Fold library id	PDB Header	Molecule	Title
c6aytD_	1.85	PDB header: hydrolase, transferase	Chain: D: PDB Molecule: 5'-methylthioadenosine/s-adenosylhomocysteine nucleosidase;

Links to external resources
Added to library: Sat Sep 15 08:23:20 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G M K I A I L G A M S E E I T P L L E T L K D Y T K I E H A N N T Y Y F A K Y K D H E L V L A Y S K I G K V N S T L S A S V M I E K F G A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T T T
S S T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V L L F T G V A G A F N P E L E I G D L L Y A T K L A Q Y D L D I T A F G H P L G F V P G N E I F I K T D E K L N N L A L E V A K E L N I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
T T
T T
G G G T
T T
T T S
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L R A G I I A T G D E F I C D E A K K A K I R E I F N A D A C E M E G A S V A L V C D A L K V P C F I L R A M S D K A G E K A E F D F D E F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T
S S S T T
S S T T

. . . . . . . . . 220 . . . . . . . . .

Sequence V I N S A K I S A N F V L K M C E K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	M	K	I	A	I	L	G	A	M	S	E	E	I	T	P	L	L	E	T	L	K	D	Y	T	K	I	E	H	A	N	N	T	Y	Y	F	A	K	Y	K	D	H	E	L	V	L	A	Y	S	K	I	G	K	V	N	S	T	L	S	A	S	V	M	I	E	K	F	G	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S	S																				T	T									T	T										S	S														T	T			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	L	L	F	T	G	V	A	G	A	F	N	P	E	L	E	I	G	D	L	L	Y	A	T	K	L	A	Q	Y	D	L	D	I	T	A	F	G	H	P	L	G	F	V	P	G	N	E	I	F	I	K	T	D	E	K	L	N	N	L	A	L	E	V	A	K	E	L	N	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	T	T			T	T											T	T				G	G	G	T			T	T			T	T	S		S																			T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	R	A	G	I	I	A	T	G	D	E	F	I	C	D	E	A	K	K	A	K	I	R	E	I	F	N	A	D	A	C	E	M	E	G	A	S	V	A	L	V	C	D	A	L	K	V	P	C	F	I	L	R	A	M	S	D	K	A	G	E	K	A	E	F	D	F	D	E	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S																T		S				S	S											T	T													S	S	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	V	I	N	S	A	K	I	S	A	N	F	V	L	K	M	C	E	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)