PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c6aicA_

Fold library id	PDB Header	Molecule	Title
c6aicA_	1.80	PDB header: structural protein	Chain: A: PDB Molecule: dead-box atp-dependent rna helicase csha;

Links to external resources
Added to library: Sat Nov 24 09:01:23 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N F K E L G I S D N T V Q S L E S M G F K E P T P I Q K D S I P Y A L Q G I D I L G Q A Q T G T G K T G A F G I P L I E K V V G K Q G V Q S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T
S
T T
T T S
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L I L A P T R E L A M Q V A E Q L R E F S R G Q G V Q V V T V F G G M P I E R Q I K A L K K G P Q I V V G T P G R V I D H L N R R T L K T D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T S
S S S
T T
S
T T
S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . .

Sequence G I H T L I L D E A D E M M N M G F I D D M R F I M D K I P A V Q R Q T M L F S A T M P K A I Q A L V Q Q F M K S P K I I K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S T T
S
T T
S
S S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	F	K	E	L	G	I	S	D	N	T	V	Q	S	L	E	S	M	G	F	K	E	P	T	P	I	Q	K	D	S	I	P	Y	A	L	Q	G	I	D	I	L	G	Q	A	Q	T	G	T	G	K	T	G	A	F	G	I	P	L	I	E	K	V	V	G	K	Q	G	V	Q	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T												T	T			S														T	T									T	T	S															T	T			S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	I	L	A	P	T	R	E	L	A	M	Q	V	A	E	Q	L	R	E	F	S	R	G	Q	G	V	Q	V	V	T	V	F	G	G	M	P	I	E	R	Q	I	K	A	L	K	K	G	P	Q	I	V	V	G	T	P	G	R	V	I	D	H	L	N	R	R	T	L	K	T	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S															T	T	T	S									S	S	S										T	T			S															T	T		S			T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
Sequence	G	I	H	T	L	I	L	D	E	A	D	E	M	M	N	M	G	F	I	D	D	M	R	F	I	M	D	K	I	P	A	V	Q	R	Q	T	M	L	F	S	A	T	M	P	K	A	I	Q	A	L	V	Q	Q	F	M	K	S	P	K	I	I	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T								S							T	T												S			T	T								S														S	S	S