PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5zyuA_

Fold library id	PDB Header	Molecule	Title
c5zyuA_	1.75	PDB header: dna binding protein/dna	Chain: A: PDB Molecule: mitochondrial genome maintenance exonuclease 1;

Links to external resources
Added to library: Sat Sep 22 08:35:53 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence N W F P I F N P E R S D K V P L K I P L Q R N V I P S V T R V L Q Q T M T K Q Q V F L L E R W K Q R M I L E L G E D G F K E Y T S N V F L Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S
S
B T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G K R F H E A L E S I L S P Q N L L K S G Y I E S V Q H I L K D V S G V R A L E S A V Q H E T L N Y I G L L D C V A E Y Q G K L C V I D W K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
G G G S T T T T T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence T S E K P K P F I Q S T F D N P L Q V V A Y M G A M N H D T N Y S F Q V Q C G L I V V A Y K D G S P A H P H F M D A E L C S Q Y W T K W L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S G G G G T T T
T T
S S
T T

. . . . . . . . . 220 . . .

Sequence R L E E Y T E K K K N Q N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	N	W	F	P	I	F	N	P	E	R	S	D	K	V	P	L	K	I	P	L	Q	R	N	V	I	P	S	V	T	R	V	L	Q	Q	T	M	T	K	Q	Q	V	F	L	L	E	R	W	K	Q	R	M	I	L	E	L	G	E	D	G	F	K	E	Y	T	S	N	V	F	L	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S		T	T	S															S		B							T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	K	R	F	H	E	A	L	E	S	I	L	S	P	Q	N	L	L	K	S	G	Y	I	E	S	V	Q	H	I	L	K	D	V	S	G	V	R	A	L	E	S	A	V	Q	H	E	T	L	N	Y	I	G	L	L	D	C	V	A	E	Y	Q	G	K	L	C	V	I	D	W	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S				G	G	G	S						T					T	T														T	T	T	T												T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	T	S	E	K	P	K	P	F	I	Q	S	T	F	D	N	P	L	Q	V	V	A	Y	M	G	A	M	N	H	D	T	N	Y	S	F	Q	V	Q	C	G	L	I	V	V	A	Y	K	D	G	S	P	A	H	P	H	F	M	D	A	E	L	C	S	Q	Y	W	T	K	W	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S				S	G	G	G	G	T	T														T		T	T		S	S												T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.
Sequence	R	L	E	E	Y	T	E	K	K	K	N	Q	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											T	T