PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5ygfA_

Fold library id	PDB Header	Molecule	Title
c5ygfA_	1.70	PDB header: protein binding	Chain: A: PDB Molecule: gh18329p;

Links to external resources
Added to library: Sat Mar 17 08:28:23 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S K P M E V Y V S A V A S P T K F W V Q L I G P Q S K K L A S M V Q E M T S Y Y S S A E N R A K H V L T A P Y V G Q I V A A V F K F D E K W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T S T T B
S
T T
T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence Y R A E I V D I M P N Q Y N P K E Q V I D L Y F V D Y G D S E Y I S P A D I C E L R T D F L T L R F Q A V E C F L A N V K S T I Q T I T W P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T S T T T
G G G
G G G G
S
T T
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K S S I A K F E E L T E V A H W R K L I A R V V T Y K E R P R A T T A V S A A A K E G T P L P G V E L F D P A D N S E L N I A D L M I T Q G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T
S S
S G G G S
T T S S
S S
T T

. . . . .

Sequence F A L P L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	K	P	M	E	V	Y	V	S	A	V	A	S	P	T	K	F	W	V	Q	L	I	G	P	Q	S	K	K	L	A	S	M	V	Q	E	M	T	S	Y	Y	S	S	A	E	N	R	A	K	H	V	L	T	A	P	Y	V	G	Q	I	V	A	A	V	F	K	F	D	E	K	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T								S																	T	T	S						T	T	B			S			T	T								T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	Y	R	A	E	I	V	D	I	M	P	N	Q	Y	N	P	K	E	Q	V	I	D	L	Y	F	V	D	Y	G	D	S	E	Y	I	S	P	A	D	I	C	E	L	R	T	D	F	L	T	L	R	F	Q	A	V	E	C	F	L	A	N	V	K	S	T	I	Q	T	I	T	W	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S		T	T	S								T	T	T								G	G	G						G	G	G	G		S										T	T				S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	S	S	I	A	K	F	E	E	L	T	E	V	A	H	W	R	K	L	I	A	R	V	V	T	Y	K	E	R	P	R	A	T	T	A	V	S	A	A	A	K	E	G	T	P	L	P	G	V	E	L	F	D	P	A	D	N	S	E	L	N	I	A	D	L	M	I	T	Q	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T	T	T	T																	S	S				S	G	G	G	S												T	T	S	S		S	S									T	T
	.	.	.	.	.
Sequence	F	A	L	P	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S