PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5yfkA_

Fold library id	PDB Header	Molecule	Title
c5yfkA_	1.80	PDB header: transferase	Chain: A: PDB Molecule: uncharacterized protein sortase b;

Links to external resources
Added to library: Sat Oct 21 08:22:45 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Y Y T D S R D Y D N L R S L S P L S S P E E H K Q D A E S E K N L K N I N P D Y R F W I K V E G T N I D F P V V Q G K D N D F Y L H H N F N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T G G G G
S
T T T T S S
S S S S G G G S B
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K E K S F S G S I F V D S E N N L N D D S N I V V Y G H N M R N D T M F A Q I K H F K N E N F F N A N K Y V T L Y R E G K K S T F E I F S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
B
S S
T T
T T T
S
S S S
T T G G G G G G G S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Y Q E N A K D L E S E I K T K F S N K E D Y E K Y L K E Q E S K S L F K R D G I D L N S N D R I L T L I T S G Y D F V N A R I V V V A K E I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T
S S
T T
T T
S S S T T

.

Sequence D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Y	Y	T	D	S	R	D	Y	D	N	L	R	S	L	S	P	L	S	S	P	E	E	H	K	Q	D	A	E	S	E	K	N	L	K	N	I	N	P	D	Y	R	F	W	I	K	V	E	G	T	N	I	D	F	P	V	V	Q	G	K	D	N	D	F	Y	L	H	H	N	F	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	T	T					G	G	G	G		S																						T	T								T	T	S	S									S	S	S	S	G	G	G	S	B		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	E	K	S	F	S	G	S	I	F	V	D	S	E	N	N	L	N	D	D	S	N	I	V	V	Y	G	H	N	M	R	N	D	T	M	F	A	Q	I	K	H	F	K	N	E	N	F	F	N	A	N	K	Y	V	T	L	Y	R	E	G	K	K	S	T	F	E	I	F	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		B		S	S							T	T			T	T	T		S										S	S	S		T	T	G	G	G	G	G	G	G	S															T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Y	Q	E	N	A	K	D	L	E	S	E	I	K	T	K	F	S	N	K	E	D	Y	E	K	Y	L	K	E	Q	E	S	K	S	L	F	K	R	D	G	I	D	L	N	S	N	D	R	I	L	T	L	I	T	S	G	Y	D	F	V	N	A	R	I	V	V	V	A	K	E	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														S			S	S														T		S	S			T	T					T	T											S	S	S	T	T
	.
Sequence	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)