PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5x3xm_

Fold library id	PDB Header	Molecule	Title
c5x3xm_	2.79	PDB header: transport protein	Chain: M: PDB Molecule: cobalt transport protein cbim;

Links to external resources
Added to library: Sat Apr 15 09:39:28 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M H I M E G Y L P V T H A I G W S L A A A P F V V A G A L K I R K I V A E R P E A R M T L A A A G A F A F V L S A L K I P S V T G S C S H P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S S T T
T T T T S
B
S S S S
B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T G T G L G A V V F G P S V M A V L G V I V L L F Q A L L L A H G G L T T L G A N A F S M A I V G P W V A F G V Y K L A G K A G A S M A V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T S
S
S S S T T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . .

Sequence V F L A A F L G D L A T Y V T T S L Q L A L A Y P D P A S G F L G A A L K F G S V F A L T Q I P L A I A E G F L T V I V V D A L A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S S S T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	H	I	M	E	G	Y	L	P	V	T	H	A	I	G	W	S	L	A	A	A	P	F	V	V	A	G	A	L	K	I	R	K	I	V	A	E	R	P	E	A	R	M	T	L	A	A	A	G	A	F	A	F	V	L	S	A	L	K	I	P	S	V	T	G	S	C	S	H	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S	S	S	T	T																													T	T																T	T	S		B			S	S	S	S		B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	G	T	G	L	G	A	V	V	F	G	P	S	V	M	A	V	L	G	V	I	V	L	L	F	Q	A	L	L	L	A	H	G	G	L	T	T	L	G	A	N	A	F	S	M	A	I	V	G	P	W	V	A	F	G	V	Y	K	L	A	G	K	A	G	A	S	M	A	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S		T																			S		S		S	S	S	T	T							T	T																T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
Sequence	V	F	L	A	A	F	L	G	D	L	A	T	Y	V	T	T	S	L	Q	L	A	L	A	Y	P	D	P	A	S	G	F	L	G	A	A	L	K	F	G	S	V	F	A	L	T	Q	I	P	L	A	I	A	E	G	F	L	T	V	I	V	V	D	A	L	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								S			S	S	S	T	T