PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5whgA_

Fold library id	PDB Header	Molecule	Title
c5whgA_	2.70	PDB header: dna binding protein	Chain: A: PDB Molecule: protein vms1;

Links to external resources
Added to library: Sat Nov 18 08:38:47 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L K K N D L Y I F D L S E Q L L N S L K L X S C S V C Q X S H Y Q T D Y H L X N V K R N L R G S P Y I Y F K S K Y V L A I Y K S L F N K R S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G B T T S
T T T T
S S T
G G G S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L S N P N E A L T F W N S Q E N P X A I S A L F X V G G G H F A G A I V S H Q R L N E T L I E Q A V N F L E H K T F H R Y T S A L K T D I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S T T
T T
T T S S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G V L K D W E P Y L S K C D N I F I R A R N V S D K K I F T D N T V L N K G D E R I K S F P F T T N R P T V L E L K K A W C E L S Y L K I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
S G G G T T T S S S
S S
T T
S S
S S
B

. .

Sequence P K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	K	K	N	D	L	Y	I	F	D	L	S	E	Q	L	L	N	S	L	K	L	X	S	C	S	V	C	Q	X	S	H	Y	Q	T	D	Y	H	L	X	N	V	K	R	N	L	R	G	S	P	Y	I	Y	F	K	S	K	Y	V	L	A	I	Y	K	S	L	F	N	K	R	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G	G	B	T	T	S															T	T	T	T					S	S												T																	G	G	G	S		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	S	N	P	N	E	A	L	T	F	W	N	S	Q	E	N	P	X	A	I	S	A	L	F	X	V	G	G	G	H	F	A	G	A	I	V	S	H	Q	R	L	N	E	T	L	I	E	Q	A	V	N	F	L	E	H	K	T	F	H	R	Y	T	S	A	L	K	T	D	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S										S	S	T	T		T	T										T	T									S	S										T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	V	L	K	D	W	E	P	Y	L	S	K	C	D	N	I	F	I	R	A	R	N	V	S	D	K	K	I	F	T	D	N	T	V	L	N	K	G	D	E	R	I	K	S	F	P	F	T	T	N	R	P	T	V	L	E	L	K	K	A	W	C	E	L	S	Y	L	K	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T						T		S								S					G	G	G	T	T	T	S	S	S		S	S		T	T					S	S				S	S														B
	.	.
Sequence	P	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)