PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5waqA_

Fold library id	PDB Header	Molecule	Title
c5waqA_	2.50	PDB header: membrane protein	Chain: A: PDB Molecule: outer membrane protein assembly factor bamd;

Links to external resources
Added to library: Sat Dec 9 08:38:18 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T Q D W S V E K L Y A E A Q D E L N S S N Y T R A V K L Y E I L E S R F P T S R H A R Q S Q L D T A Y A Y Y K D D E K D K A L A A I E R F R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S T T S T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R L H P Q H P N M D Y A L Y L R G L V L F N E D P K A N R E A Y Q A F A E L V Q R F P N S K Y A A D A T A R M V K L V D A L G G N E M S V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
T T S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R Y Y M K R G A Y I A A A N R A K K I I G S Y Q N T R Y V E E S L A I L E L A Y K K L D K P Q L A A D T R R V L E T N F P K S P F L T H A W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T S T T T T
T T
S

. .

Sequence Q P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	Q	D	W	S	V	E	K	L	Y	A	E	A	Q	D	E	L	N	S	S	N	Y	T	R	A	V	K	L	Y	E	I	L	E	S	R	F	P	T	S	R	H	A	R	Q	S	Q	L	D	T	A	Y	A	Y	Y	K	D	D	E	K	D	K	A	L	A	A	I	E	R	F	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																			T	T																S	T	T	S																	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	L	H	P	Q	H	P	N	M	D	Y	A	L	Y	L	R	G	L	V	L	F	N	E	D	P	K	A	N	R	E	A	Y	Q	A	F	A	E	L	V	Q	R	F	P	N	S	K	Y	A	A	D	A	T	A	R	M	V	K	L	V	D	A	L	G	G	N	E	M	S	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T		T	T																																			T	T	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	Y	Y	M	K	R	G	A	Y	I	A	A	A	N	R	A	K	K	I	I	G	S	Y	Q	N	T	R	Y	V	E	E	S	L	A	I	L	E	L	A	Y	K	K	L	D	K	P	Q	L	A	A	D	T	R	R	V	L	E	T	N	F	P	K	S	P	F	L	T	H	A	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T																	T	T	S	T	T															T	T																	T	T						S
	.	.
Sequence	Q	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)