PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5w8cA_

Fold library id	PDB Header	Molecule	Title
c5w8cA_	1.85	PDB header: biosynthetic protein	Chain: A: PDB Molecule: autoinducer synthase;

Links to external resources
Added to library: Sat Aug 26 08:21:33 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G H M I H A I S A V N R H L Y E D V L E Q H F R L R H D I F V E E R H W E T L R R P D G R E V D S Y D D E D T V Y L L A L E G R R V V G G H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T G G G
T T T T
G G G
T T S
T T
S T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R L Y P T T K P S M M S E V F P H L A A V R G C P S D P L I W E W S R Y F V V R D R R D G A L N L Q L M A A V Q E F C L D Q G I A Q V S A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
T
G G G G T T T
T T
G G G T T S S T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence M E T W W L P R F H E A G F V V T P L G L P A L V E N A W T M A A T V D I R R Q T L D V L H D R I G M P S I V Q Q D G P R L D A V A R A N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S
T T
T
S
S S

.

Sequence C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	H	M	I	H	A	I	S	A	V	N	R	H	L	Y	E	D	V	L	E	Q	H	F	R	L	R	H	D	I	F	V	E	E	R	H	W	E	T	L	R	R	P	D	G	R	E	V	D	S	Y	D	D	E	D	T	V	Y	L	L	A	L	E	G	R	R	V	V	G	G	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									T	T	T	G	G	G																	T	T	T	T			G	G	G			T	T	S					T	T		S	T	T									T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	L	Y	P	T	T	K	P	S	M	M	S	E	V	F	P	H	L	A	A	V	R	G	C	P	S	D	P	L	I	W	E	W	S	R	Y	F	V	V	R	D	R	R	D	G	A	L	N	L	Q	L	M	A	A	V	Q	E	F	C	L	D	Q	G	I	A	Q	V	S	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	S							T		G	G	G	G	T	T	T						T	T											G	G	G	T	T	S	S																	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	M	E	T	W	W	L	P	R	F	H	E	A	G	F	V	V	T	P	L	G	L	P	A	L	V	E	N	A	W	T	M	A	A	T	V	D	I	R	R	Q	T	L	D	V	L	H	D	R	I	G	M	P	S	I	V	Q	Q	D	G	P	R	L	D	A	V	A	R	A	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T								T	T							S						T	T																							T		S							S	S
	.
Sequence	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)