PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5w5aB_

Fold library id	PDB Header	Molecule	Title
c5w5aB_	1.85	PDB header: transcription	Chain: B: PDB Molecule: hth-type transcriptional regulator cmr;

Links to external resources
Added to library: Sat Dec 16 08:40:59 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G Q P P S E A Q V R Q A A W I A R C V G R G G S A P L H R D D V S A L A E T L Q V K E F A P G A V V F H A D Q T A D G V W I V R H G L I E L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
B
G G G
S S
T T T T S
T T
T T S B
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A V G S R R R R A V V N I L H P G D V D G D I P L L L E X P X V Y T G R A L T Q A T C L F L D R Q A F E R L L A T H P A I A R R W L S S V A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S T T
T T
S T T
B
S S S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence Q R V S T A Q I R L X G X L G R P L P A Q V A Q L L L D E A I D A R I E L A Q R T L A A X L G A Q R P S I N K I L K E F E R D R L I T V G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S
B T T
T
T T S
S

. . . . . . . . . 220 . . . . . .

Sequence A V I E I T D Q H G L R A R A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	Q	P	P	S	E	A	Q	V	R	Q	A	A	W	I	A	R	C	V	G	R	G	G	S	A	P	L	H	R	D	D	V	S	A	L	A	E	T	L	Q	V	K	E	F	A	P	G	A	V	V	F	H	A	D	Q	T	A	D	G	V	W	I	V	R	H	G	L	I	E	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																G	G	G		B		G	G	G		S	S								T	T	T	T	S							T	T						T	T	S	B										S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	V	G	S	R	R	R	R	A	V	V	N	I	L	H	P	G	D	V	D	G	D	I	P	L	L	L	E	X	P	X	V	Y	T	G	R	A	L	T	Q	A	T	C	L	F	L	D	R	Q	A	F	E	R	L	L	A	T	H	P	A	I	A	R	R	W	L	S	S	V	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		S	T	T									T	T				S						T	T		B		S	S					S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	Q	R	V	S	T	A	Q	I	R	L	X	G	X	L	G	R	P	L	P	A	Q	V	A	Q	L	L	L	D	E	A	I	D	A	R	I	E	L	A	Q	R	T	L	A	A	X	L	G	A	Q	R	P	S	I	N	K	I	L	K	E	F	E	R	D	R	L	I	T	V	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T	S															B	T	T														T																T	T	S					S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	A	V	I	E	I	T	D	Q	H	G	L	R	A	R	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S					S									T