PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5w4dA_

Fold library id	PDB Header	Molecule	Title
c5w4dA_	1.60	PDB header: rna binding protein	Chain: A: PDB Molecule: p-granule scaffold protein;

Links to external resources
Added to library: Sat Jun 16 08:17:00 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence K R E I V E F L G I R T Y F F P N L A L Y A V N N D E L L V S D P N K A N S F A A Y V F G A S D K K P S V D D I V Q X L F P S G S D S G T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S
T
G G G S
T T S
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L T S X D T L L A L G P D F L T E F K K R N Q D L A R F N L T H D L S I L A Q G D E D A A K K K L N L X G R K A K L Q K T E A A K I L A I L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G T T T
T T G G G G S S
T S S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I K T I N S E E N Y E K F T E L S E L C G L D L D F D A Y V F T K I L G L E D E D T A D E V E V I R D N F L N R L D Q T K P K L A D I X R N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S G G G G G G T
T
S T T T

.

Sequence G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	K	R	E	I	V	E	F	L	G	I	R	T	Y	F	F	P	N	L	A	L	Y	A	V	N	N	D	E	L	L	V	S	D	P	N	K	A	N	S	F	A	A	Y	V	F	G	A	S	D	K	K	P	S	V	D	D	I	V	Q	X	L	F	P	S	G	S	D	S	G	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T				S	S											T								G	G	G	S								T	T	S															S		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	T	S	X	D	T	L	L	A	L	G	P	D	F	L	T	E	F	K	K	R	N	Q	D	L	A	R	F	N	L	T	H	D	L	S	I	L	A	Q	G	D	E	D	A	A	K	K	K	L	N	L	X	G	R	K	A	K	L	Q	K	T	E	A	A	K	I	L	A	I	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												G	G	G													T	T	T				T	T	G	G	G	G	S	S																		T	S	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	K	T	I	N	S	E	E	N	Y	E	K	F	T	E	L	S	E	L	C	G	L	D	L	D	F	D	A	Y	V	F	T	K	I	L	G	L	E	D	E	D	T	A	D	E	V	E	V	I	R	D	N	F	L	N	R	L	D	Q	T	K	P	K	L	A	D	I	X	R	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T			S									G	G	G	G	G	G	T													T			S	T	T	T
	.
Sequence	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)