PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5vmsA_

Fold library id	PDB Header	Molecule	Title
c5vmsA_	3.70	PDB header: transport protein, calcium binding prote	Chain: A: PDB Molecule: potassium voltage-gated channel subfamily kqt member 1;

Links to external resources
Added to library: Sat Jun 10 08:37:40 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T N I Q G R V Y N F L E R P T G W K C F V Y H F T V F L I V L I C L I F S V L S T I Q Q Y N N L A T E T L F W M E I V L V V F F G A E Y V V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S G G G S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R L W S A G C R S K Y V G V W G R L R F A R K P I S V I D L I V V V A S V I V L C V G S A I R G I R F L Q I L R M L H V D R Q G G T W R L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G S T T S
S
S G G G G S G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence G S V V F I H R Q E L I T T L Y I G F L G L I F S S Y F V Y L A E K D A I D S S G E Y Q F G S Y A D A L W W G V V T V T T I G Y G D K V P Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S S S
B
T T S S B T T S S T
S S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence T W I G K T I A S C F S V F A I S F F A L P A G I L G S G F A L K V Q Q K Q R Q K H F N R Q I P A A A S L I Q T A W R C Y A A E N P D S A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T
G G G S T T S T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . .

Sequence W K I E H H R A A I K V I R R M Q Y F V A K K K F Q Q A R K P Y D V R D V I E Q Y S Q G H L N L M V R I K E L Q R R L D Q S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

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Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	N	I	Q	G	R	V	Y	N	F	L	E	R	P	T	G	W	K	C	F	V	Y	H	F	T	V	F	L	I	V	L	I	C	L	I	F	S	V	L	S	T	I	Q	Q	Y	N	N	L	A	T	E	T	L	F	W	M	E	I	V	L	V	V	F	F	G	A	E	Y	V	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S																													S	G	G	G	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	L	W	S	A	G	C	R	S	K	Y	V	G	V	W	G	R	L	R	F	A	R	K	P	I	S	V	I	D	L	I	V	V	V	A	S	V	I	V	L	C	V	G	S	A	I	R	G	I	R	F	L	Q	I	L	R	M	L	H	V	D	R	Q	G	G	T	W	R	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					G	G	G	S	T	T	S												S																								S										G	G	G	G	S	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	G	S	V	V	F	I	H	R	Q	E	L	I	T	T	L	Y	I	G	F	L	G	L	I	F	S	S	Y	F	V	Y	L	A	E	K	D	A	I	D	S	S	G	E	Y	Q	F	G	S	Y	A	D	A	L	W	W	G	V	V	T	V	T	T	I	G	Y	G	D	K	V	P	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T																										S	S	S		B		T	T	S	S	B	T	T	S	S														T					S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	T	W	I	G	K	T	I	A	S	C	F	S	V	F	A	I	S	F	F	A	L	P	A	G	I	L	G	S	G	F	A	L	K	V	Q	Q	K	Q	R	Q	K	H	F	N	R	Q	I	P	A	A	A	S	L	I	Q	T	A	W	R	C	Y	A	A	E	N	P	D	S	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S																																						T				G	G	G																				S	T	T	S	T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
Sequence	W	K	I	E	H	H	R	A	A	I	K	V	I	R	R	M	Q	Y	F	V	A	K	K	K	F	Q	Q	A	R	K	P	Y	D	V	R	D	V	I	E	Q	Y	S	Q	G	H	L	N	L	M	V	R	I	K	E	L	Q	R	R	L	D	Q	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																														S