PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5vkvA_

Fold library id	PDB Header	Molecule	Title
c5vkvA_	UNK	PDB header: oxidoreductase	Chain: A: PDB Molecule: cytochrome c-type biogenesis protein ccda;

Links to external resources
Added to library: Sat Feb 3 08:24:23 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M S L S L T A A F L A G V L S F L S P C V L P L V P T Y L F Y L G G A R G R P L F N A L F F I L G F G A V F F L L G L P F T L L G G L L F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T T T
T G G G
S
T T T T T T G G G S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence H R Q T L A R V G G V V L V L F G L Y M L G L R P R W G V S L R Y E G E T S R P L G A F L L G A T L A L G W T P C I G P I L G A I L T L T A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S S S
S S
S S
G G G T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V G G G V G F L L A Y I L G L A V P F F V V A L F A D R I K G W L R R A G R I S H Y V E V L A G V V L V L V G V L L F T G T F T A L N T F F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S T T
S S

. . . . . . . . . 220 . . . .

Sequence L R I T P E W L Q R Y L P S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	S	L	S	L	T	A	A	F	L	A	G	V	L	S	F	L	S	P	C	V	L	P	L	V	P	T	Y	L	F	Y	L	G	G	A	R	G	R	P	L	F	N	A	L	F	F	I	L	G	F	G	A	V	F	F	L	L	G	L	P	F	T	L	L	G	G	L	L	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T															T	T	T		T								G	G	G				S																				T	T	T	T					T	T	G	G	G	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	H	R	Q	T	L	A	R	V	G	G	V	V	L	V	L	F	G	L	Y	M	L	G	L	R	P	R	W	G	V	S	L	R	Y	E	G	E	T	S	R	P	L	G	A	F	L	L	G	A	T	L	A	L	G	W	T	P	C	I	G	P	I	L	G	A	I	L	T	L	T	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T																		T	T			S	S	S				S	S				S	S																			G	G	G												T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	G	G	G	V	G	F	L	L	A	Y	I	L	G	L	A	V	P	F	F	V	V	A	L	F	A	D	R	I	K	G	W	L	R	R	A	G	R	I	S	H	Y	V	E	V	L	A	G	V	V	L	V	L	V	G	V	L	L	F	T	G	T	F	T	A	L	N	T	F	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T																																				S																						T	T		S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Sequence	L	R	I	T	P	E	W	L	Q	R	Y	L	P	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S						T	T