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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c5vhvB_

Fold library idPDB HeaderMoleculeTitle
c5vhvB_1.80PDB header: hydrolase/dnaChain: B: PDB Molecule: alkylpurine dna glycosylase alkc;


Added to library: Sat Oct 28 08:54:30 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence AAPALKEIFNVERLQHIASEMTAVYPAFDAKGFLKHAKAGLAELSVMQRMARVSESLHAVIPLDYPQTLT
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Known secondary structure (DSSP)



GGGGGS
TT

TTGGG



S
 .........80.........90.........100.........110.........120.........130.........140
Sequence LLYALAPRLNSGFVSLFLPHYVASYGRDDFKRSMAALKYFTTFGSAEFAIRHFLLHDFQRTLAVMQAWSQ
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Known secondary structure (DSSP) GGG
S
TTGGG
TT
TTTS

TTSTT
 .........150.........160.........170.........180.........190.........200.........210
Sequence DDNEHVRRLASEGSRPRLPWSFRLAEVQADPELCASILDHLKADSSLYVRKSVANHLNDITKDHPEWVLS
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Known secondary structure (DSSP)
SSTT
TT
TTS



TTSSTT
S
TT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LIEGWNLENPHTAWIARHALRSLIKQGNTRALTLMGAGAKAEVKIHHLMVTPAVINLGERINLSFTLEST
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Known secondary structure (DSSP) TTS
TTSTTT
TT

S


SS
TT

 .........290.........300.........310.........320.........330.........340.........350
Sequence APAPQKLVVDYAIDYVKSTGHGAAKVFKLKAFSLGAGAQQHIRREQHIRDMTTRKHYPGRHVVHVLVNGE
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Known secondary structure (DSSP) SSS

TTS

TT



BTTB


STT
 .........360.
Sequence RLGSAEFELRA
Predicted secondary structure




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Known secondary structure (DSSP)


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Michael Sternberg

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