PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5v88A_

Fold library id	PDB Header	Molecule	Title
c5v88A_	1.60	PDB header: ligase / protein binding	Chain: A: PDB Molecule: lysozyme,dcn1-like protein 1;

Links to external resources
Added to library: Sat May 27 08:25:29 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence S Q D L E N L Y F Q G S M N I F E M L R I D E G L R L K I Y K D T E G Y Y T I G I G H L L T K S P S L N A A K S E L D K A I G R N T N G V I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G G T T S
S S
T
S S S
T T S
S
T S
T T B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence T K D E A E K L F N Q D V D A A V R G I L R N A K L K P V Y D S L D A V R R A A L I N M V F Q M G E T G V A G F T N S L R M L Q Q K R W A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T S
T
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A A V N L A K S R W Y N Q T P N R T K R V I T T F A T G T W D A Y K N L R K K L E Q L Y N R Y K D P Q D E N K I G I D G I Q Q F C D D L A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S S S T T
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence D P A S I S V L I I A W K F R A A T Q C E F S K Q E F M D G M T E L G C D S I E K L K A Q I P K M E Q E L K E P G R F K D F Y Q F T F N F A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S T T
S
T T
B T
S S T T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence K N P G Q K G L D L E M A I A Y W N L V L N G R F K F L D L W N K F L L E S I P K D T W N L L L D F S T M I A D D M S N Y D E E G A W P V L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
S S B
S T T T
T T
B
T T
T T
T T S

. . . . . . . . . 360 . . .

Sequence I D D F V E F A R P Q I A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	S	Q	D	L	E	N	L	Y	F	Q	G	S	M	N	I	F	E	M	L	R	I	D	E	G	L	R	L	K	I	Y	K	D	T	E	G	Y	Y	T	I	G	I	G	H	L	L	T	K	S	P	S	L	N	A	A	K	S	E	L	D	K	A	I	G	R	N	T	N	G	V	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				G	G	G	G	T	T	S		S	S										T										S	S	S						T	T					S		S														T	S			T	T	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	T	K	D	E	A	E	K	L	F	N	Q	D	V	D	A	A	V	R	G	I	L	R	N	A	K	L	K	P	V	Y	D	S	L	D	A	V	R	R	A	A	L	I	N	M	V	F	Q	M	G	E	T	G	V	A	G	F	T	N	S	L	R	M	L	Q	Q	K	R	W	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								T	T	T							S																						T										T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	A	V	N	L	A	K	S	R	W	Y	N	Q	T	P	N	R	T	K	R	V	I	T	T	F	A	T	G	T	W	D	A	Y	K	N	L	R	K	K	L	E	Q	L	Y	N	R	Y	K	D	P	Q	D	E	N	K	I	G	I	D	G	I	Q	Q	F	C	D	D	L	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T	S						S														S	S	S																				T	T																	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	D	P	A	S	I	S	V	L	I	I	A	W	K	F	R	A	A	T	Q	C	E	F	S	K	Q	E	F	M	D	G	M	T	E	L	G	C	D	S	I	E	K	L	K	A	Q	I	P	K	M	E	Q	E	L	K	E	P	G	R	F	K	D	F	Y	Q	F	T	F	N	F	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S										T	T		S		T	T			B												T		S	S															T	T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	K	N	P	G	Q	K	G	L	D	L	E	M	A	I	A	Y	W	N	L	V	L	N	G	R	F	K	F	L	D	L	W	N	K	F	L	L	E	S	I	P	K	D	T	W	N	L	L	L	D	F	S	T	M	I	A	D	D	M	S	N	Y	D	E	E	G	A	W	P	V	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S		T	T		S	S	B													S	T	T	T		T	T												B																	T	T		T	T			T	T	S
	.	.	.	.	.	.	.	.	.	360	.	.	.
Sequence	I	D	D	F	V	E	F	A	R	P	Q	I	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)