PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5v4sB_

Fold library id	PDB Header	Molecule	Title
c5v4sB_	4.20	PDB header: transport protein	Chain: B: PDB Molecule: transporter, cation channel family / cyclic nucleotide-

Links to external resources
Added to library: Sat Apr 15 09:22:39 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R I R V Y W D I L V F I C I F W A S L E S P L R I V L L L T C I Y F F I D F V F A L D I L W N G S W F I I D L I A A L P L E Y A T T T I F Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S G G G G
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L Y L L L G V T R I L K V F R I S D I L Q R I N L A F Q P T P G I L R L V L F A F W A T L V A H W C A V G W L Y V D D L L D Y Q T G W S E Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) G G G T G G G G G
T T T T S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I I A L Y W T V A T I A T V G Y G D I T P S T D S Q R I Y T I F V M I L G A G V Y A T V I G N I A S I L G S L D L A K A A Q R K K M A Q V D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence S F L K A R N I S Q N I R R R V R D Y Y M Y I I D R G W G E D E N A L L N D L P I S L R R E V K I Q L H R D L L E K V P F L K G A D P A L V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T T S
T T S
S S
T S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence T S L V F S M K P M I F L E G D T I F R R G E K G D D L Y I L S E G S V D I L D S D E K T I L L S L Q E G Q F F G E L A L V M D A P R S A T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T S B
S
T T S
T T
S T T
B
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . .

Sequence V R A T T T C E I Y T L S K T D F D N V L K R F S Q F R S A I E E S V A H

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	I	R	V	Y	W	D	I	L	V	F	I	C	I	F	W	A	S	L	E	S	P	L	R	I	V	L	L	L	T	C	I	Y	F	F	I	D	F	V	F	A	L	D	I	L	W	N	G	S	W	F	I	I	D	L	I	A	A	L	P	L	E	Y	A	T	T	T	I	F	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S	G	G	G	G																																	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	Y	L	L	L	G	V	T	R	I	L	K	V	F	R	I	S	D	I	L	Q	R	I	N	L	A	F	Q	P	T	P	G	I	L	R	L	V	L	F	A	F	W	A	T	L	V	A	H	W	C	A	V	G	W	L	Y	V	D	D	L	L	D	Y	Q	T	G	W	S	E	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							G	G	G	T	G	G	G	G	G																T	T																												T	T	S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	I	A	L	Y	W	T	V	A	T	I	A	T	V	G	Y	G	D	I	T	P	S	T	D	S	Q	R	I	Y	T	I	F	V	M	I	L	G	A	G	V	Y	A	T	V	I	G	N	I	A	S	I	L	G	S	L	D	L	A	K	A	A	Q	R	K	K	M	A	Q	V	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												T	T					S	S				S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	S	F	L	K	A	R	N	I	S	Q	N	I	R	R	R	V	R	D	Y	Y	M	Y	I	I	D	R	G	W	G	E	D	E	N	A	L	L	N	D	L	P	I	S	L	R	R	E	V	K	I	Q	L	H	R	D	L	L	E	K	V	P	F	L	K	G	A	D	P	A	L	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T																				T	T	T	S							T	T	S																		S	S						T	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	T	S	L	V	F	S	M	K	P	M	I	F	L	E	G	D	T	I	F	R	R	G	E	K	G	D	D	L	Y	I	L	S	E	G	S	V	D	I	L	D	S	D	E	K	T	I	L	L	S	L	Q	E	G	Q	F	F	G	E	L	A	L	V	M	D	A	P	R	S	A	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)														T	T						T	T	S	B										S							T	T	S									T	T				S						T	T		B		S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Sequence	V	R	A	T	T	T	C	E	I	Y	T	L	S	K	T	D	F	D	N	V	L	K	R	F	S	Q	F	R	S	A	I	E	E	S	V	A	H
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S	S																			T												T