PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5u8mA_

Fold library id	PDB Header	Molecule	Title
c5u8mA_	2.11	PDB header: transcription	Chain: A: PDB Molecule: response regulator;

Links to external resources
Added to library: Sat Dec 23 09:08:55 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G K R I L L L E K E R N L A H F L S L E L Q K E Q Y R V D L V E E G Q K A L S M A L Q T D Y D L I L L N V N L G D M M A Q D F A E K L S R T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
S
S B
S S S B

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence K P A S V I M I L D H W E D L Q E E L E V V Q R F A V S Y I Y K P V L I E N L V A R I S A I F R G R D F I D Q H C S L M K V P R T Y R N L R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T
S S
T T
S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I D V E H H T V Y R G E E M I A L T R R E Y D L L A T L M G S K K V L T R E Q L L E S V W K Y E S A T E T N I V D V Y I R Y L R S K L D V K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T T T
S S
B
T T T T T
T
T

. . . . . . . . . 220 . . . . . . . . .

Sequence G Q K S Y I K T V R G V G Y T M Q E G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S
S T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	K	R	I	L	L	L	E	K	E	R	N	L	A	H	F	L	S	L	E	L	Q	K	E	Q	Y	R	V	D	L	V	E	E	G	Q	K	A	L	S	M	A	L	Q	T	D	Y	D	L	I	L	L	N	V	N	L	G	D	M	M	A	Q	D	F	A	E	K	L	S	R	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S															T	T																			S			S						S	B		S	S	S	B
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	K	P	A	S	V	I	M	I	L	D	H	W	E	D	L	Q	E	E	L	E	V	V	Q	R	F	A	V	S	Y	I	Y	K	P	V	L	I	E	N	L	V	A	R	I	S	A	I	F	R	G	R	D	F	I	D	Q	H	C	S	L	M	K	V	P	R	T	Y	R	N	L	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T														T	T									S						S																						T	T			S	S							T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	D	V	E	H	H	T	V	Y	R	G	E	E	M	I	A	L	T	R	R	E	Y	D	L	L	A	T	L	M	G	S	K	K	V	L	T	R	E	Q	L	L	E	S	V	W	K	Y	E	S	A	T	E	T	N	I	V	D	V	Y	I	R	Y	L	R	S	K	L	D	V	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T	T	T					T	T																				S	S		B										T	T	T	T	T				T																	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.
Sequence	G	Q	K	S	Y	I	K	T	V	R	G	V	G	Y	T	M	Q	E	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	S			S					T	T	T