PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5u32A_

Fold library id	PDB Header	Molecule	Title
c5u32A_	2.19	PDB header: transferase	Chain: A: PDB Molecule: trna ligase;

Links to external resources
Added to library: Sat Nov 18 08:33:00 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence L S T T T K Y I F V P I A T I G C G K T T V F N T L N N L F P Q W T H I Q N D N I S K K A K L K I C D L T L L A L E D D D Q S V V L F D R N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T S S
T T S G G G S
T T
S S
T T S S T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N S A S R E R R Q I F T T I D Q K R D E H L D D T V D L K Y I A I N F I P E D L S E E E L W D I T Y N R V I Q L D E N L V E S V M K G F I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R Y Q P I N T S R S P D D Q F D H V I H L K L S K D E N S S K S S L E N V R I I I D D L V Q N F P D L I K E K P A D E L I N E C F Q K A L D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T S T T G G G
S
B T T B
T T T
S S
T

. . .

Sequence Y K P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	L	S	T	T	T	K	Y	I	F	V	P	I	A	T	I	G	C	G	K	T	T	V	F	N	T	L	N	N	L	F	P	Q	W	T	H	I	Q	N	D	N	I	S	K	K	A	K	L	K	I	C	D	L	T	L	L	A	L	E	D	D	D	Q	S	V	V	L	F	D	R	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S												T	T	S	S													T	T	S					G	G	G	S		T	T		S	S									T	T	S	S	T	T								S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	S	A	S	R	E	R	R	Q	I	F	T	T	I	D	Q	K	R	D	E	H	L	D	D	T	V	D	L	K	Y	I	A	I	N	F	I	P	E	D	L	S	E	E	E	L	W	D	I	T	Y	N	R	V	I	Q	L	D	E	N	L	V	E	S	V	M	K	G	F	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																					T	T											S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	Y	Q	P	I	N	T	S	R	S	P	D	D	Q	F	D	H	V	I	H	L	K	L	S	K	D	E	N	S	S	K	S	S	L	E	N	V	R	I	I	I	D	D	L	V	Q	N	F	P	D	L	I	K	E	K	P	A	D	E	L	I	N	E	C	F	Q	K	A	L	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T						T	T	S	T	T	G	G	G		S											B	T	T	B																			T	T	T		S	S																T
	.	.	.
Sequence	Y	K	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)