PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5u1dB_

Fold library id	PDB Header	Molecule	Title
c5u1dB_	3.97	PDB header: transport protein	Chain: B: PDB Molecule: antigen peptide transporter 2;

Links to external resources
Added to library: Thu Feb 9 14:48:58 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence D Q V N N K V L M W R L L K L S R P D L P L L V A A F F F L V L A V L G E T L I P H Y S G R V I D I L G G D F D P H A F A S A I F F M C L F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S F G S S L S A G C R G G C F T Y T M S R I N L R I R E Q L F S S L L R Q D L G F F Q E T K T G E L N S R L S S D T T L M S N W L P L N A N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V L L R S L V K V V G L Y G F M L S I S P R L T L L S L L H M P F T I A A E K V Y N T R H Q E V L R E I Q D A V A R A G Q V V R E A V G G L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence Q T V R S F G A E E H E V C R Y K E A L E Q C R Q L Y W R R D L E R A L Y L L V R R V L H L G V Q M L M L S C G L Q Q M Q D G E L T Q G S L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence L S F M I Y Q E S V G S Y V Q T L V Y I Y G D M L S N V G A A E K V F S Y M D R Q P N L P S P G T L A P T T L Q G V V K F Q D V S F A Y P N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S
B
S S
B
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence R P D R P V L K G L T F T L R P G E V T A L V G P N G S G K S T V A A L L Q N L Y Q P T G G Q V L L D E K P I S Q Y E H C Y L H S Q V V S V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S
B
S S
T T S
T S S
S
B B S S S B T T T B

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence G Q E P V L F S G S V R N N I A Y G L Q S C E D D K V M A A A Q A A H A D D F I Q E M E H G I Y T D V G E K G S Q L A A G Q K Q R L A I A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
S S B T T T
S S
T
S T T G G G
B
T T T S S S

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . .

Sequence A L V R D P R V L I L D E A T S A L D V Q C E Q A L Q D W N S R G D R T V L V I A H R L Q T V Q R A H Q I L V L Q E G K L Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T T S
T S G G G G G G
S S
S B
S S S B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	D	Q	V	N	N	K	V	L	M	W	R	L	L	K	L	S	R	P	D	L	P	L	L	V	A	A	F	F	F	L	V	L	A	V	L	G	E	T	L	I	P	H	Y	S	G	R	V	I	D	I	L	G	G	D	F	D	P	H	A	F	A	S	A	I	F	F	M	C	L	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T	G	G	G																			T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	F	G	S	S	L	S	A	G	C	R	G	G	C	F	T	Y	T	M	S	R	I	N	L	R	I	R	E	Q	L	F	S	S	L	L	R	Q	D	L	G	F	F	Q	E	T	K	T	G	E	L	N	S	R	L	S	S	D	T	T	L	M	S	N	W	L	P	L	N	A	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																					S								S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	L	L	R	S	L	V	K	V	V	G	L	Y	G	F	M	L	S	I	S	P	R	L	T	L	L	S	L	L	H	M	P	F	T	I	A	A	E	K	V	Y	N	T	R	H	Q	E	V	L	R	E	I	Q	D	A	V	A	R	A	G	Q	V	V	R	E	A	V	G	G	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																					S	T	T							T																																							T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	Q	T	V	R	S	F	G	A	E	E	H	E	V	C	R	Y	K	E	A	L	E	Q	C	R	Q	L	Y	W	R	R	D	L	E	R	A	L	Y	L	L	V	R	R	V	L	H	L	G	V	Q	M	L	M	L	S	C	G	L	Q	Q	M	Q	D	G	E	L	T	Q	G	S	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T																																																							T	T
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	L	S	F	M	I	Y	Q	E	S	V	G	S	Y	V	Q	T	L	V	Y	I	Y	G	D	M	L	S	N	V	G	A	A	E	K	V	F	S	Y	M	D	R	Q	P	N	L	P	S	P	G	T	L	A	P	T	T	L	Q	G	V	V	K	F	Q	D	V	S	F	A	Y	P	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																								T	T	T	T																	S						B			S	S					B										S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	R	P	D	R	P	V	L	K	G	L	T	F	T	L	R	P	G	E	V	T	A	L	V	G	P	N	G	S	G	K	S	T	V	A	A	L	L	Q	N	L	Y	Q	P	T	G	G	Q	V	L	L	D	E	K	P	I	S	Q	Y	E	H	C	Y	L	H	S	Q	V	V	S	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T			S									B		S	S								T	T	S											T	S	S			S					B	B	S	S	S	B	T	T	T	B
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	G	Q	E	P	V	L	F	S	G	S	V	R	N	N	I	A	Y	G	L	Q	S	C	E	D	D	K	V	M	A	A	A	Q	A	A	H	A	D	D	F	I	Q	E	M	E	H	G	I	Y	T	D	V	G	E	K	G	S	Q	L	A	A	G	Q	K	Q	R	L	A	I	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S					S	S	B						T	T	T		S	S														T								S	T	T	G	G	G		B			T	T	T	S	S	S
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.
Sequence	A	L	V	R	D	P	R	V	L	I	L	D	E	A	T	S	A	L	D	V	Q	C	E	Q	A	L	Q	D	W	N	S	R	G	D	R	T	V	L	V	I	A	H	R	L	Q	T	V	Q	R	A	H	Q	I	L	V	L	Q	E	G	K	L	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							S						S		T	T	T	S									T	S	G	G	G	G	G	G							S	S									S					B		S	S	S	B