PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5ojyA_

Fold library id	PDB Header	Molecule	Title
c5ojyA_	1.85	PDB header: transcription	Chain: A: PDB Molecule: tetr family transcription regulator;

Links to external resources
Added to library: Sat Apr 14 09:39:54 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q P G S I W L R E V K A R Q P L S R E Q I V Q A A V R L L D E G G V R N L R M R Q L A D S L N S A P M S L Y W H V S T K D D L L E L A I D A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T G G G
T G G G
T T S
T T
S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V F P D P P S R S G T G D W R D D I K A G A T D L F E V L L R H S W M I E L M G G H P P V G P R A L A H T S A I I E I L E Q A H F S P R Q L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T T T T S
S T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence D S A L S A I Y Y Y T V G A A L S E A S W Q A M A R Q S A E S E E E W V S R L G P Y L G M A T Q S H P A S L A D Y V K R S A S S S T G Q R F

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
G G G S
T T

. . . . . . . . . 220 .

Sequence H D G L E M V S G M G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	P	G	S	I	W	L	R	E	V	K	A	R	Q	P	L	S	R	E	Q	I	V	Q	A	A	V	R	L	L	D	E	G	G	V	R	N	L	R	M	R	Q	L	A	D	S	L	N	S	A	P	M	S	L	Y	W	H	V	S	T	K	D	D	L	L	E	L	A	I	D	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T					G	G	G																							T	G	G	G										T	T	S							T	T		S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	F	P	D	P	P	S	R	S	G	T	G	D	W	R	D	D	I	K	A	G	A	T	D	L	F	E	V	L	L	R	H	S	W	M	I	E	L	M	G	G	H	P	P	V	G	P	R	A	L	A	H	T	S	A	I	I	E	I	L	E	Q	A	H	F	S	P	R	Q	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	S	S																				T	T						T	T	T	S				S																T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	D	S	A	L	S	A	I	Y	Y	Y	T	V	G	A	A	L	S	E	A	S	W	Q	A	M	A	R	Q	S	A	E	S	E	E	E	W	V	S	R	L	G	P	Y	L	G	M	A	T	Q	S	H	P	A	S	L	A	D	Y	V	K	R	S	A	S	S	S	T	G	Q	R	F
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																													T																		G	G	G	S												T	T
	.	.	.	.	.	.	.	.	.	220	.
Sequence	H	D	G	L	E	M	V	S	G	M	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T