PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5ocxH_

Fold library id	PDB Header	Molecule	Title
c5ocxH_	1.75	PDB header: immune system	Chain: H: PDB Molecule: fab fragment of anti-citrullinated protein antibody e4 -

Links to external resources
Added to library: Sat Jul 7 08:51:48 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q V Q L E E S G P G L V R P S E T L S L S C T V S G F P M S E S Y F W G W I R Q S P G K G L E W L G S V I H T G T T Y Y R P S L E S R L T I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
T T S
S S
T T S S
T T S
T T
G G G T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence A M D P S K N Q V S L S L T S V T V A D S A M Y Y C V R I R G G S S N W L D P W G P G I V V T A S S A K T T P P S V Y P L A P G C G T G S S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
S
G G G
T T T T
S S
B
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V T L G C L V K G Y F P E S V T V T W N S G S L S S S V H T F P A L L Q S G L Y T M S S S V T V P S S T W P S Q T V T C S V A H P A S S T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) B S S
T T
T T T T T T T T S
G G G T

. . . . . . . .

Sequence V D K K I E P R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	V	Q	L	E	E	S	G	P	G	L	V	R	P	S	E	T	L	S	L	S	C	T	V	S	G	F	P	M	S	E	S	Y	F	W	G	W	I	R	Q	S	P	G	K	G	L	E	W	L	G	S	V	I	H	T	G	T	T	Y	Y	R	P	S	L	E	S	R	L	T	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S		S				T	T	S										S	S		T	T	S	S										T	T	S										T	T							G	G	G	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	A	M	D	P	S	K	N	Q	V	S	L	S	L	T	S	V	T	V	A	D	S	A	M	Y	Y	C	V	R	I	R	G	G	S	S	N	W	L	D	P	W	G	P	G	I	V	V	T	A	S	S	A	K	T	T	P	P	S	V	Y	P	L	A	P	G	C	G	T	G	S	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	T	T								S			G	G	G											T	T	T	T																S	S			B															S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	T	L	G	C	L	V	K	G	Y	F	P	E	S	V	T	V	T	W	N	S	G	S	L	S	S	S	V	H	T	F	P	A	L	L	Q	S	G	L	Y	T	M	S	S	S	V	T	V	P	S	S	T	W	P	S	Q	T	V	T	C	S	V	A	H	P	A	S	S	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)											B	S	S									T	T														T	T												T	T	T	T	T	T	S									G	G	G	T
	.	.	.	.	.	.	.	.
Sequence	V	D	K	K	I	E	P	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)