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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c5ocpA_

Fold library idPDB HeaderMoleculeTitle
c5ocpA_1.70PDB header: sugar binding proteinChain: A: PDB Molecule: periplasmic binding protein/laci transcriptional regulator;


Added to library: Sat Aug 4 09:27:02 2018
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TTVGFSQVGSESGWRTSFSEAVKAEAKQRGIDLKFADAQQKQENQIKAVRSFIAQGVDAIIIAPVVETGW
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Known secondary structure (DSSP)



SST

TT
TT
S

SSSSS
 .........80.........90.........100.........110.........120.........130.........140
Sequence KPVLKEAKRAKIPVVIVDRNIKVDDDSLFLTRIASDFSEEGRKIGQWLMDKTQGNCDIAELQGTVGATAA
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Known secondary structure (DSSP) TT

SS



S
GGG
S

TTT


TT
 .........150.........160.........170.........180.........190.........200.........210
Sequence IDRAAGFNQVIANYPNAKIVRSQTGEFTRAKGKEVMEGFLKAQNGQPLCAVWSHNDEMALGAVQAIKEAG
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Known secondary structure (DSSP) TT
TT
TT
TT



SSTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence LKPGKDILIVSVDGVPDYFKAMADGDVNATVELSPYLGGPAFDAIDAYLKGNKDQAKLISTTGDVFTQET
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Known secondary structure (DSSP)

BTTTB

TS



S

TT




S



 .........290.........300..
Sequence AAAEYEKRRQQAAALEHHHHHH
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Known secondary structure (DSSP) TS




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Imperial College,
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Michael Sternberg

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