PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5o5jV_

Fold library id	PDB Header	Molecule	Title
c5o5jV_	3.45	PDB header: ribosome	Chain: V: PDB Molecule: 30s ribosomal protein s2;

Links to external resources
Added to library: Sat Jul 15 08:28:00 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M A V V T M K Q L L D S G A H F G H Q T R R W N P K M K R F I F T D R N G I Y I I D L Q Q T L T Y I D K A Y E F V K E T V A H G G T V L F V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S B
S S S
G G G T T T
S S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence G T K K Q A Q E S I A E E A T R V G M P Y V N Q R W L G G M L T N F S T V H K R L Q R L K E L E A M E Q T G G F E G R T K K E I L M L T R E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T
S
T T S S S S T T T
S T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K N K L E R S L G G I R D M Q K V P S A V W V V D T N K E H I A V G E A R K L G I P V I A I L D T N C D P D V V D Y P I P G N D D A I R S A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S
S
T T T S T T
T T S
G G G
S
S S

. . . . . . . . . 220 . . . . . . . .

Sequence A L L T K V I A S A V A E G L Q A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	A	V	V	T	M	K	Q	L	L	D	S	G	A	H	F	G	H	Q	T	R	R	W	N	P	K	M	K	R	F	I	F	T	D	R	N	G	I	Y	I	I	D	L	Q	Q	T	L	T	Y	I	D	K	A	Y	E	F	V	K	E	T	V	A	H	G	G	T	V	L	F	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S								T	T		S	B				S	S	S			G	G	G	T	T	T						S	S																										T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	G	T	K	K	Q	A	Q	E	S	I	A	E	E	A	T	R	V	G	M	P	Y	V	N	Q	R	W	L	G	G	M	L	T	N	F	S	T	V	H	K	R	L	Q	R	L	K	E	L	E	A	M	E	Q	T	G	G	F	E	G	R	T	K	K	E	I	L	M	L	T	R	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S															T						S				T	T	S	S	S	S					T															T	T		S	T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	N	K	L	E	R	S	L	G	G	I	R	D	M	Q	K	V	P	S	A	V	W	V	V	D	T	N	K	E	H	I	A	V	G	E	A	R	K	L	G	I	P	V	I	A	I	L	D	T	N	C	D	P	D	V	V	D	Y	P	I	P	G	N	D	D	A	I	R	S	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S							S			S							T	T	T	S										T	T									T	T	S		G	G	G		S							S	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Sequence	A	L	L	T	K	V	I	A	S	A	V	A	E	G	L	Q	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)