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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c5nzvC_

Fold library idPDB HeaderMoleculeTitle
c5nzvC_17.30PDB header: transport proteinChain: C: PDB Molecule: coatomer subunit beta';


Added to library: Sat Jul 1 10:22:00 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MPLRLDIKRKLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPVRAAKFVARKN
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S


S


SS

SSS
TTTT
S
SS


TTTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence WVVTGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPFILTSSDDMLIKLWDWDKKWSCSQVFEG
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Known secondary structure (DSSP) TTTTTTT

SS


TTTTTTTSTTSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence HTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFTLEGHEKGVNCIDYYSGGDKPYLISGADDRL
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Known secondary structure (DSSP)
SS



STTTTS
TTS
TT
SS

SS





S
SSS

B

SSS
 .........220.........230.........240.........250.........260.........270.........280
Sequence VKIWDYQNKTCVQTLEGHAQNVSCASFHPELPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVASL
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Known secondary structure (DSSP) TTTT


SS

S

SSSS

TT

TTT
S








 .........290.........300.........310.........320.........330.........340.........350
Sequence RGSNNVALGYDEGSIIVKLGREEPAMSMDANGKIIWAKHSEVQQANLKAMGDTEIKDGERLPLAVKDMGS
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Known secondary structure (DSSP) SSSS
SS


S


TTT

SSSS
S











SSS










 .........360.........370.........380.........390.........400.........410.........420
Sequence CEIYPQTIQHNPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFAWAHDSSEYAIRESNSIVKIFKNFKE
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Known secondary structure (DSSP)

S
TTTTTTTT

B
STTTT
SSSSTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence KKSFKPDFGAESIYGGFLLGVRSVNGLAFYDWENTELIRRIEIQPKHIFWSDSGELVCIATEESFFILKY
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Known secondary structure (DSSP)

SS






BSSSSS
SSS



BSS

STT
SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence LSEKVLAAQETHEGVTEDGIEDAFEVLGEIQEIVKTGLWVGDCFIYTSSVNRLNYYVGGEIVTIAHLDRT
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SSB
SSS



SSTT
TTSTT
SS
 .........570.........580.........590.........600.........610.........620.........630
Sequence MYLLGYIPKDNRLYLGDKELNIVSYSLLVSVLEYQTAVMRRDFSMADKVLPTIPKEQRTRVAHFLEKQGF
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Known secondary structure (DSSP)
TTTT
SSS


TS
GGG

T
 .........640.........650.........660.........670.........680.........690.........700
Sequence KQQALTVSTDPEHRFELALQLGELKIAYQLAVEAESEQKWKQLAELAISKCQFSLAQECLHHAQDYGGLL
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Known secondary structure (DSSP)




SS


T
T
 .........710.........720.........730.........740.........750.........760.........770
Sequence LLATASGNASMVNKLAEGAERDGKNNVAFMSYFLQGKLDACLELLIRTGRLPEAAFLARTYLPSQVSRVV
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Known secondary structure (DSSP)

SSSS

T
T

S
 .........780.........790.........800.........810.........820.........830.........840
Sequence KLWRENLSKVNQKAAESLADPTEYENLFPGLKEAFVVEEWVKETHADLWPAKQYPLVTPNEERNVMEEAK
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Known secondary structure (DSSP) T



BSSSBS



SS

SS


SS

SS




S
 ...
Sequence GFQ
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Known secondary structure (DSSP)
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Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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