PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5nm8A_

Fold library id	PDB Header	Molecule	Title
c5nm8A_	1.93	PDB header: plp-binding protein	Chain: A: PDB Molecule: pipy;

Links to external resources
Added to library: Sat Sep 16 08:30:01 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence Q I A E R L A S L R S Q L P P S V Q L I A V S K N H P A A A I R E A Y A A G Q R H F G E N R V Q E A I A K Q A E L T D L P D L T W H L L G K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T
T T S
T T
S
T T
T T
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L Q S N K A R K A V E H F D W I H S V D S W A L A E R L D R I A G E L G R S P K L C L Q V K L L P D P N K A G W D P A D L R A E L P Q L S Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G
S
T
B
S
T T
B
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence L Q Q V Q I R G L M V I A P L G L T A A E T Q A L F A Q A R T F A A E L Q Q Q A P Q L R L T E L S M G M S S D W P L A V A E G A T W I R V G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
T T S
T T T T T
S

. . . . . . .

Sequence T Q L F G P R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	Q	I	A	E	R	L	A	S	L	R	S	Q	L	P	P	S	V	Q	L	I	A	V	S	K	N	H	P	A	A	A	I	R	E	A	Y	A	A	G	Q	R	H	F	G	E	N	R	V	Q	E	A	I	A	K	Q	A	E	L	T	D	L	P	D	L	T	W	H	L	L	G	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S		T	T								T	T	S											T	T							S													T	T		T	T							S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	Q	S	N	K	A	R	K	A	V	E	H	F	D	W	I	H	S	V	D	S	W	A	L	A	E	R	L	D	R	I	A	G	E	L	G	R	S	P	K	L	C	L	Q	V	K	L	L	P	D	P	N	K	A	G	W	D	P	A	D	L	R	A	E	L	P	Q	L	S	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			G	G	G									S																						T									B			S			T	T				B														T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	L	Q	Q	V	Q	I	R	G	L	M	V	I	A	P	L	G	L	T	A	A	E	T	Q	A	L	F	A	Q	A	R	T	F	A	A	E	L	Q	Q	Q	A	P	Q	L	R	L	T	E	L	S	M	G	M	S	S	D	W	P	L	A	V	A	E	G	A	T	W	I	R	V	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S	S											T	T																									T	T	S										T	T	T							T	T		S
	.	.	.	.	.	.	.
Sequence	T	Q	L	F	G	P	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)