PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5na2A_

Fold library id	PDB Header	Molecule	Title
c5na2A_	1.67	PDB header: viral protein	Chain: A: PDB Molecule: capsid protein (p24);

Links to external resources
Added to library: Sat Nov 18 09:23:27 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T I Q T V N G V P Q Y V A L D P K M V S I F M E K A R E G L G G E E V Q L W F T A F S A N L T P T D M A T L I M A A P G C A A D K E I L D E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
T T T
T T S T T G G G
T S S S S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S L K Q L T A E Y D R T H P P D A P R P L P Y F T A A E I M G I G L T Q E Q Q A E A R F A P A R M Q C R A W Y L E A L G K L A A I K A K S P

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S S S S
S S
T T T T S
T S G G G T T T T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence R A V Q L R Q G A K E D Y S S F I D R L F A Q I D Q E Q N T A E V K L Y L K Q S L S I A N A N A D C K K A M S H L K P E S T L E E K L R A C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
T
T S
T T T
T T S

.

Sequence Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	I	Q	T	V	N	G	V	P	Q	Y	V	A	L	D	P	K	M	V	S	I	F	M	E	K	A	R	E	G	L	G	G	E	E	V	Q	L	W	F	T	A	F	S	A	N	L	T	P	T	D	M	A	T	L	I	M	A	A	P	G	C	A	A	D	K	E	I	L	D	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						T	T																			T	T	T		T	T	S	T	T									G	G	G												T	S	S	S	S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	L	K	Q	L	T	A	E	Y	D	R	T	H	P	P	D	A	P	R	P	L	P	Y	F	T	A	A	E	I	M	G	I	G	L	T	Q	E	Q	Q	A	E	A	R	F	A	P	A	R	M	Q	C	R	A	W	Y	L	E	A	L	G	K	L	A	A	I	K	A	K	S	P
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S		T	T	S	S	S	S		S	S							T	T	T	T	S						T	S	G	G	G																				T	T	T	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	R	A	V	Q	L	R	Q	G	A	K	E	D	Y	S	S	F	I	D	R	L	F	A	Q	I	D	Q	E	Q	N	T	A	E	V	K	L	Y	L	K	Q	S	L	S	I	A	N	A	N	A	D	C	K	K	A	M	S	H	L	K	P	E	S	T	L	E	E	K	L	R	A	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T					T	T																		T																	T	S								T	T	T			T	T	S
	.
Sequence	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)