PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5my5A_

Fold library id	PDB Header	Molecule	Title
c5my5A_	1.40	PDB header: transport protein	Chain: A: PDB Molecule: abc transporter periplasmic substrate-binding protein;

Links to external resources
Added to library: Sat Aug 5 08:28:15 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence A P V L M M A T T T S T D N T G L L D D L A P Q F T K D T G I E L R W T A V G T G K A L K M G E N C D V D I L L V H A P A A E K A F V D A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T T
S
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence F G T A R T Q L M Y N D F V I I G P A A D P A G V K G M T V A A A L G K I A A D N A V F V S R G D N S G T H K M E K S L W K Q I E G P S P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B S
T T
T T
T T
T T
S
T T S S S
T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K E A W Y V Q T G Q G M L R T I N V A A E K G G Y T M T D R G T Y I K Y E A S M D G N P P L K I L V E G D K I L F N Q Y S A I P V N P A H C

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S
T
T T T
S
G G G B
T T T S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250

Sequence P K V K K D L A D K F V N W M A S P A T Q K T I G D F K L M G K A L F T P N A E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	A	P	V	L	M	M	A	T	T	T	S	T	D	N	T	G	L	L	D	D	L	A	P	Q	F	T	K	D	T	G	I	E	L	R	W	T	A	V	G	T	G	K	A	L	K	M	G	E	N	C	D	V	D	I	L	L	V	H	A	P	A	A	E	K	A	F	V	D	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																T														S																			T	T			S																T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	F	G	T	A	R	T	Q	L	M	Y	N	D	F	V	I	I	G	P	A	A	D	P	A	G	V	K	G	M	T	V	A	A	A	L	G	K	I	A	A	D	N	A	V	F	V	S	R	G	D	N	S	G	T	H	K	M	E	K	S	L	W	K	Q	I	E	G	P	S	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	B	S																T	T		T	T			T	T													T	T								S													T	T	S	S	S				T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	E	A	W	Y	V	Q	T	G	Q	G	M	L	R	T	I	N	V	A	A	E	K	G	G	Y	T	M	T	D	R	G	T	Y	I	K	Y	E	A	S	M	D	G	N	P	P	L	K	I	L	V	E	G	D	K	I	L	F	N	Q	Y	S	A	I	P	V	N	P	A	H	C
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T		T	T						S													T																	T	T	T			S									G	G	G									B		T	T	T	S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Sequence	P	K	V	K	K	D	L	A	D	K	F	V	N	W	M	A	S	P	A	T	Q	K	T	I	G	D	F	K	L	M	G	K	A	L	F	T	P	N	A	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T															S													T	T