PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5mskA_

Fold library id	PDB Header	Molecule	Title
c5mskA_	3.60	PDB header: structural protein	Chain: A: PDB Molecule: proteasome activator complex subunit 2;

Links to external resources
Added to library: Sat Sep 16 08:25:26 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence R L S G E A R K Q V D V F R Q N L F Q E A D D F L C T F L P R K I I S L S Q L L Q E D S L N V A D L S S L R A P L D I P I P D P P P K C G Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
G G G T T T S G G G S
S
G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L P G N E K L L A L L A L V K P E V W T L K E K C I L V I T W I Q H L I P K I E D G N D F G V A I Q E K V L E R V N A V K T K V E A F Q T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T
S S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I S K Y F S E R G D A V A K A S K D T H V M D Y R A L V H E R D E A A Y G A L R A M V L D L R A F Y A E L Y H I I S S N L E K I V N P K G E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T T
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	R	L	S	G	E	A	R	K	Q	V	D	V	F	R	Q	N	L	F	Q	E	A	D	D	F	L	C	T	F	L	P	R	K	I	I	S	L	S	Q	L	L	Q	E	D	S	L	N	V	A	D	L	S	S	L	R	A	P	L	D	I	P	I	P	D	P	P	P	K	C	G	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S		G	G	G																				T													T	T	S	G	G	G	S		S		G	G	G	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	P	G	N	E	K	L	L	A	L	L	A	L	V	K	P	E	V	W	T	L	K	E	K	C	I	L	V	I	T	W	I	Q	H	L	I	P	K	I	E	D	G	N	D	F	G	V	A	I	Q	E	K	V	L	E	R	V	N	A	V	K	T	K	V	E	A	F	Q	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																		T	T						S	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	S	K	Y	F	S	E	R	G	D	A	V	A	K	A	S	K	D	T	H	V	M	D	Y	R	A	L	V	H	E	R	D	E	A	A	Y	G	A	L	R	A	M	V	L	D	L	R	A	F	Y	A	E	L	Y	H	I	I	S	S	N	L	E	K	I	V	N	P	K	G	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																		S	T	T																																															S	S