PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5mlqA_

Fold library id	PDB Header	Molecule	Title
c5mlqA_	3.18	PDB header: ligase	Chain: A: PDB Molecule: cdps;

Links to external resources
Added to library: Sat May 5 08:42:07 2018

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T T L L S A S H K A A Y D L R S D G I T T D G R S T V L L V S V G A D Y H E G E K L A A T I D L I N R S N F G R V S I A V A D T L Q R H N L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
S S S S
G G G
T T
T T
G G G S T
S
G G G G G T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S G G T D I D R H A R A R I A G D E W I A R N S T L L D R I D C P T N V L R W D F A L S H P R Y G D L Y D A V E H A Y E T D E P Y R H A I D

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
S S
T S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S T I D R F I E R R L S R E P D V D Q E S V R K A C R A Y L L E E C P I I X P L W A H E G F D F V I Y P Q R I S A A X G R T R E L F V V P E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T T
S S S
T T T T

. . . . . . . . . 220 . . . . . .

Sequence H P D R V A W L P L R F K K R K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	T	L	L	S	A	S	H	K	A	A	Y	D	L	R	S	D	G	I	T	T	D	G	R	S	T	V	L	L	V	S	V	G	A	D	Y	H	E	G	E	K	L	A	A	T	I	D	L	I	N	R	S	N	F	G	R	V	S	I	A	V	A	D	T	L	Q	R	H	N	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S		S	S						S	S		G	G	G				T	T									T	T		G	G	G	S															T		S									G	G	G	G	G	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	G	G	T	D	I	D	R	H	A	R	A	R	I	A	G	D	E	W	I	A	R	N	S	T	L	L	D	R	I	D	C	P	T	N	V	L	R	W	D	F	A	L	S	H	P	R	Y	G	D	L	Y	D	A	V	E	H	A	Y	E	T	D	E	P	Y	R	H	A	I	D
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S	S																									T	T		S	S												T	S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	T	I	D	R	F	I	E	R	R	L	S	R	E	P	D	V	D	Q	E	S	V	R	K	A	C	R	A	Y	L	L	E	E	C	P	I	I	X	P	L	W	A	H	E	G	F	D	F	V	I	Y	P	Q	R	I	S	A	A	X	G	R	T	R	E	L	F	V	V	P	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)															T	T	S																					T						T	T		S					S	S														T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.
Sequence	H	P	D	R	V	A	W	L	P	L	R	F	K	K	R	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S	S