PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5lq3F_

Fold library id	PDB Header	Molecule	Title
c5lq3F_	3.55	PDB header: transport protein	Chain: F: PDB Molecule: cmeb;

Links to external resources
Added to library: Sat Aug 12 09:12:52 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M F S K F F I E R P V F A S V V A I I I S L A G A I G L T N L P I E Q Y P S L T P P T V K V S A T Y T G A D A Q T I A S T V A S P I E D A I

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
T S
B
S S
S
S
S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence N G A D N M I Y M D S T S S S S G T M S L T V Y F D I G T D P D Q A T I D V N N R I S A A T A K M P D A V K K L G V T V R K T S S T T L A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
T T T T S
T T
T T S S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence I S M Y S S D G S M S A V D V Y N Y I T L N V L D E L K R V P G V G D A N A I G N R N Y S L R I W L K P D L L N K F G I T A T D V I S A V N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S S S S
T T T S T T T T
S S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence D Q N A Q Y A T G K I G E E P V T Q K S P Y V Y S I T M Q G R L Q N P S E F E N I I L R T N N D G S F L R L K D V A D V E I G S Q Q Y S S Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
S
S S
S S
S
S T
T T S
G G G T
S
S S S

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . . . . . 330 . . . . . . . . . 340 . . . . . . . . . 350

Sequence G R L N G N D A V P I M I N L Q S G A N A L H T A E L V Q A K M Q E L S K N F P K G L T Y K I P Y D T T K F V I E S I K E V V K T F V E A L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T T S
S S

. . . . . . . . . 360 . . . . . . . . . 370 . . . . . . . . . 380 . . . . . . . . . 390 . . . . . . . . . 400 . . . . . . . . . 410 . . . . . . . . . 420

Sequence I L V I I V M Y M F L K N F R A T L I P M I A V P V S L L G T F A G L Y V L G F S I N L L T L F A L I L A I G I V V D D A I I V V E N I D R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T
B

. . . . . . . . . 430 . . . . . . . . . 440 . . . . . . . . . 450 . . . . . . . . . 460 . . . . . . . . . 470 . . . . . . . . . 480 . . . . . . . . . 490

Sequence I L H E N E Q I S V K D A A I Q A M Q E V S S P V I S I V L V L C A V F V P V S F I S G F V G E I Q R Q F A L T L A I S V T I S G F V A L T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
S S
T
S S T

. . . . . . . . . 500 . . . . . . . . . 510 . . . . . . . . . 520 . . . . . . . . . 530 . . . . . . . . . 540 . . . . . . . . . 550 . . . . . . . . . 560

Sequence L T P S L C A L F L R R N E G E P F K F V K K F N D F F D W S T S V F S A G V A Y I L K R T I R F V L I F C I M L G A I F Y L Y K A V P N S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
T T S
T T S
B

. . . . . . . . . 570 . . . . . . . . . 580 . . . . . . . . . 590 . . . . . . . . . 600 . . . . . . . . . 610 . . . . . . . . . 620 . . . . . . . . . 630

Sequence L V P E E D Q G L M I S I I N L P S A S A L H R T I S E V D H I S Q E V L K T N G V K D A M A M I G F D L F T S S L K E N A A A M F I G L Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S S
S
T T
T T S T T T
T T T
T T

. . . . . . . . . 640 . . . . . . . . . 650 . . . . . . . . . 660 . . . . . . . . . 670 . . . . . . . . . 680 . . . . . . . . . 690 . . . . . . . . . 700

Sequence D W K D R N V S A D Q I I A E L N K K F A F D R N A S S V F I G L P P I P G L S I T G G F E M Y V Q N K S G K S Y D E I Q K D V N K L V A A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T T
S
T S S
S S S
S S B T T B S S S S
T T

. . . . . . . . . 710 . . . . . . . . . 720 . . . . . . . . . 730 . . . . . . . . . 740 . . . . . . . . . 750 . . . . . . . . . 760 . . . . . . . . . 770

Sequence A N Q R K E L S R V R T T L D T T F P Q Y K L I I D R D K L K H Y N L N M Q D V F N T M N A T I G T Y Y V N D F S M L G K N F Q V N I R A K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T S S S
T T
T S
T T

. . . . . . . . . 780 . . . . . . . . . 790 . . . . . . . . . 800 . . . . . . . . . 810 . . . . . . . . . 820 . . . . . . . . . 830 . . . . . . . . . 840

Sequence G D F R N T Q D A L K N I F V R S N D G K M I P L D S F L T L Q R S S G P D D V K R F N L F P A A Q V Q G Q P A P G Y T S G Q A I E A I A Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T G G G
T T S
S S S S B
T T S

. . . . . . . . . 850 . . . . . . . . . 860 . . . . . . . . . 870 . . . . . . . . . 880 . . . . . . . . . 890 . . . . . . . . . 900 . . . . . . . . . 910

Sequence V A K E T L G D D Y S I A W S G S A Y Q E V S S K G T A S Y A F A L G M I F V F L I L A A Q Y E R W L I P L A V V T A V P F A V F G S F L L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T
T S
T T T
T T T G G G

. . . . . . . . . 920 . . . . . . . . . 930 . . . . . . . . . 940 . . . . . . . . . 950 . . . . . . . . . 960 . . . . . . . . . 970 . . . . . . . . . 980

Sequence V Y L R G F S N D I Y F Q T G L L L L I G L S A K N A I L I V E F A M E E R F K K G K G V F E A A V A A A K L R F R P I I M T S L A F T F G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B
T S
T T

. . . . . . . . . 990 . . . . . . . . . 1000 . . . . . . . . . 1010 . . . . . . . . . 1020 . . . . . . . . . 1030 . . . . .

Sequence V L P M I F A T G A G S A S R H S L G T G L I G G M I A A S T L A I F F V P L F F Y L L E N F N E W L D K K R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S T
S T T T T T T T T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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Phyre2 is part of Genome3D

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	F	S	K	F	F	I	E	R	P	V	F	A	S	V	V	A	I	I	I	S	L	A	G	A	I	G	L	T	N	L	P	I	E	Q	Y	P	S	L	T	P	P	T	V	K	V	S	A	T	Y	T	G	A	D	A	Q	T	I	A	S	T	V	A	S	P	I	E	D	A	I
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T																						T	S		B		S	S		S		S											S	S										T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	N	G	A	D	N	M	I	Y	M	D	S	T	S	S	S	S	G	T	M	S	L	T	V	Y	F	D	I	G	T	D	P	D	Q	A	T	I	D	V	N	N	R	I	S	A	A	T	A	K	M	P	D	A	V	K	K	L	G	V	T	V	R	K	T	S	S	T	T	L	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T	T		T	T										T	T	S										T	T																		T	T	S	S		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	I	S	M	Y	S	S	D	G	S	M	S	A	V	D	V	Y	N	Y	I	T	L	N	V	L	D	E	L	K	R	V	P	G	V	G	D	A	N	A	I	G	N	R	N	Y	S	L	R	I	W	L	K	P	D	L	L	N	K	F	G	I	T	A	T	D	V	I	S	A	V	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S	S	S		T	T									T								S	T	T							T	T		S	S															T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	D	Q	N	A	Q	Y	A	T	G	K	I	G	E	E	P	V	T	Q	K	S	P	Y	V	Y	S	I	T	M	Q	G	R	L	Q	N	P	S	E	F	E	N	I	I	L	R	T	N	N	D	G	S	F	L	R	L	K	D	V	A	D	V	E	I	G	S	Q	Q	Y	S	S	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S									S		S	S		S	S													S			S						T							T	T	S					G	G	G	T						S				S	S	S
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350
Sequence	G	R	L	N	G	N	D	A	V	P	I	M	I	N	L	Q	S	G	A	N	A	L	H	T	A	E	L	V	Q	A	K	M	Q	E	L	S	K	N	F	P	K	G	L	T	Y	K	I	P	Y	D	T	T	K	F	V	I	E	S	I	K	E	V	V	K	T	F	V	E	A	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T												S	S																		T	T	S			S	S
	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420
Sequence	I	L	V	I	I	V	M	Y	M	F	L	K	N	F	R	A	T	L	I	P	M	I	A	V	P	V	S	L	L	G	T	F	A	G	L	Y	V	L	G	F	S	I	N	L	L	T	L	F	A	L	I	L	A	I	G	I	V	V	D	D	A	I	I	V	V	E	N	I	D	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)													S	S								T																	T			B
	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490
Sequence	I	L	H	E	N	E	Q	I	S	V	K	D	A	A	I	Q	A	M	Q	E	V	S	S	P	V	I	S	I	V	L	V	L	C	A	V	F	V	P	V	S	F	I	S	G	F	V	G	E	I	Q	R	Q	F	A	L	T	L	A	I	S	V	T	I	S	G	F	V	A	L	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T	T		S	S																																		T			S	S																									T
	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
Sequence	L	T	P	S	L	C	A	L	F	L	R	R	N	E	G	E	P	F	K	F	V	K	K	F	N	D	F	F	D	W	S	T	S	V	F	S	A	G	V	A	Y	I	L	K	R	T	I	R	F	V	L	I	F	C	I	M	L	G	A	I	F	Y	L	Y	K	A	V	P	N	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T											S							T	T																									S																				T	T	S		B
	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630
Sequence	L	V	P	E	E	D	Q	G	L	M	I	S	I	I	N	L	P	S	A	S	A	L	H	R	T	I	S	E	V	D	H	I	S	Q	E	V	L	K	T	N	G	V	K	D	A	M	A	M	I	G	F	D	L	F	T	S	S	L	K	E	N	A	A	A	M	F	I	G	L	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S	S						S										T	T																		T	T	S	T	T									T			T	T	T					T	T
	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Sequence	D	W	K	D	R	N	V	S	A	D	Q	I	I	A	E	L	N	K	K	F	A	F	D	R	N	A	S	S	V	F	I	G	L	P	P	I	P	G	L	S	I	T	G	G	F	E	M	Y	V	Q	N	K	S	G	K	S	Y	D	E	I	Q	K	D	V	N	K	L	V	A	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	T			S													T	S	S		S	S	S									S	S	B	T	T	B	S	S	S	S								T	T
	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770
Sequence	A	N	Q	R	K	E	L	S	R	V	R	T	T	L	D	T	T	F	P	Q	Y	K	L	I	I	D	R	D	K	L	K	H	Y	N	L	N	M	Q	D	V	F	N	T	M	N	A	T	I	G	T	Y	Y	V	N	D	F	S	M	L	G	K	N	F	Q	V	N	I	R	A	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		T	T	S	S	S																											T	T														T	S										T	T
	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840
Sequence	G	D	F	R	N	T	Q	D	A	L	K	N	I	F	V	R	S	N	D	G	K	M	I	P	L	D	S	F	L	T	L	Q	R	S	S	G	P	D	D	V	K	R	F	N	L	F	P	A	A	Q	V	Q	G	Q	P	A	P	G	Y	T	S	G	Q	A	I	E	A	I	A	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	T	T	T	G	G	G						T	T	S																		S						S	S	S	B										T	T	S
	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910
Sequence	V	A	K	E	T	L	G	D	D	Y	S	I	A	W	S	G	S	A	Y	Q	E	V	S	S	K	G	T	A	S	Y	A	F	A	L	G	M	I	F	V	F	L	I	L	A	A	Q	Y	E	R	W	L	I	P	L	A	V	V	T	A	V	P	F	A	V	F	G	S	F	L	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S		T	T							T								S		T																					T	T		T	T	T					G	G	G
	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980
Sequence	V	Y	L	R	G	F	S	N	D	I	Y	F	Q	T	G	L	L	L	L	I	G	L	S	A	K	N	A	I	L	I	V	E	F	A	M	E	E	R	F	K	K	G	K	G	V	F	E	A	A	V	A	A	A	K	L	R	F	R	P	I	I	M	T	S	L	A	F	T	F	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T			B																																T	S																												T	T
	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.
Sequence	V	L	P	M	I	F	A	T	G	A	G	S	A	S	R	H	S	L	G	T	G	L	I	G	G	M	I	A	A	S	T	L	A	I	F	F	V	P	L	F	F	Y	L	L	E	N	F	N	E	W	L	D	K	K	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S					T			S	T	T																			T	T	T	T	T	T	T