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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c5lmxA_

Fold library idPDB HeaderMoleculeTitle
c5lmxA_4.90PDB header: transcriptionChain: A: PDB Molecule: dna-directed rna polymerase i subunit rpa190;


Added to library: Sat Mar 25 09:10:12 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence MDISKPVGSEITSVDFGILTAKEIRNLSAKQITNPTVLDNLGHPVSGGLYDLALGAFLRNLCSTCGLDEK
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Known secondary structure (DSSP)

TTS













S
B


S

B
STT
B
TTSTT
GGG


TT


SSS


TT
 .........80.........90.........100.........110.........120.........130.........140
Sequence FCPGHQGHIELPVPCYNPLFFNQLYIYLRASCLFCHHFRLKSVEVHRYACKLRLLQYGLIDESYKLDEIT
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Known secondary structure (DSSP) T





GGGB
SSS
SBSS
TTTT
GGG

 .........150.........160.........170.........180.........190.........200.........210
Sequence LDISSTLLNELKSKRSEYVDMAIAKALSDGRTTERGSFTATVNDERKKLVHEFHKKLLSRGKCDNCGMFS
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Known secondary structure (DSSP)



TTT

TT





B
SSS

B
 .........220.........230.........240.........250.........260.........270.........280
Sequence PKFRKDGFTKIFETALNEKQITNNRVKGFISTYILSTEVKNILDTVFRKEQCVLQYVFHSRPNLSRKLVK
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Known secondary structure (DSSP)


SSS




TS




TS
SS

TT




 .........290.........300.........310.........320.........330.........340.........350
Sequence ADSFFMDVLVVPPTRFRLNSQNQLLSKVLTTSLLIRDLNDDLSKLKVSLEDRRVIFSRLMNAFVTIQNDV
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Known secondary structure (DSSP) GGGS

GGG







S
T
 .........360.........370.........380.........390.........400.........410.........420
Sequence NAFIDSGVKQALEGLFRKHMKRVNYAARSVISPDPNIETNEIGVPPVFAVKLTYPEPVTAYNIAELRQAV
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Known secondary structure (DSSP)








SS

SSS
TT
TTS


TTT
 .........430.........440.........450.........460.........470.........480.........490
Sequence INGPDKWPGATQIQNEDGSLVSLIGMSVEQRKALANQLLTPSSNVSTHTLNKKVYRHIKNRDVVLMNRQP
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Known secondary structure (DSSP) TTTSSS

TTS

SS

TTTT


S
GGGTT





SS

SS
 .........500.........510.........520.........530.........540.........550.........560
Sequence TLHKASMMGHKVRVLPNEKTLRLHYANTGAYNADFDGDEMNMHFPQNENARAEALNLANTDSQYLTPTSG
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Known secondary structure (DSSP)

SGGG
TT

S
GGGT

TTT



STSSSSS
SB
TTTS
 .........570.........580.........590.........600.........610.........620.........630
Sequence SPVRGLIQDHISAGVWLTSKDSFFTREQYQQYIYGCIRPEDGHTTRSKIVTLPPTIFKPYPLWTGKQIIT
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Known secondary structure (DSSP)
B




STSTT



GGGT

SSSS





SB
SSS
B
 .........640.........650.........660.........670.........680.........690.........700
Sequence TVLLNVTPPDMPGINLISKNKIKNEYWGKGSLENEVLFKDGALLCGILDKSQYGASKYGIVHSLHEVYGP
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Known secondary structure (DSSP) S
SSS




SS
GGGG
TT

TTSSS




SS
TTS
 .........710.........720.........730.........740.........750.........760.........770
Sequence EVAAKVLSVLGRLFTNYITATAFTCGMDDLRLTAEGNKWRTDILKTSVDTGREAAAEVTNLDKDTPADDP
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Known secondary structure (DSSP) S




SGGG
B
TTTT
TT


TT
 .........780.........790.........800.........810.........820.........830.........840
Sequence ELLKRLQEILRDNNKSGILDAVTSSKVNAITSQVVSKCVPDGTMKKFPCNSMQAMALSGAKGSNVNVSQI
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Known secondary structure (DSSP)
TTTTBSS
TTT
TSS

 .........850.........860.........870.........880.........890.........900.........910
Sequence MCLLGQQALEGRRVPVMVSGKTLPSFKPYETDAMAGGYVKGRFYSGIKPQEYYFHCMAGREGLSGYLQRC
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Known secondary structure (DSSP) T



BTTBS



TTS
SSTTS
TT


TTTTT


TTT




 .........920.........930.........940.........950.........960.........970.........980
Sequence LTKQLEGVHVSYDNSIRDADGTLVQFMYGGDAIDITKESHMTQFEFCLDNYYALLKKYNPSALIEHLDVE
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Known secondary structure (DSSP) TT

TTSS
TTS
SSSSSS
B
TTTTTTTS
TT

TTTTTTSBSS
 .........990.........1000.........1010.........1020.........1030.........1040.........1050
Sequence SALKYSKKTLKYRKKHSKEPHYKQSVKYDPVLAKYNPAKYLGSVSENFQDKLESFLDKNSKGVNEKKFRA
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Known secondary structure (DSSP) TSSS
TTTS

SS

S
TTTBTT








 .........1060.........1070.........1080.........1090.........1100.........1110.........1120
Sequence LMQLKYMRSLINPGEAVGIIASQSVGEPSTQMLGIPRLREIVMTASAAIKTPQMTLPIWNDVSDEQADTF
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Known secondary structure (DSSP) TTB

S


GGGG


TTT

SS
SS

B
SSS
 .........1130.........1140.........1150.........1160.........1170.........1180.........1190
Sequence CKSISKVLLSEVIDKVIVTETTGTARSYVIHMRFFDNNEYSEEYDVSKEELQNVISNQFIHLLEAAIVKE
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Known secondary structure (DSSP) S
STTT




S


T
 .........1200.........1210.........1220.........1230.........1240.........1250.........1260
Sequence IKKQKRNKVQRDRQSAIISHHRFITKYNFDDESGKWCEFKLELAADTEKLLMVNIVEEICRKSIIRQIPH
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Known secondary structure (DSSP)

TT
SS
SSS


TTS



TT


TT
 .........1270.........1280.........1290.........1300.........1310.........1320.........1330
Sequence IDRCVHPEPENGKRVLVTEGVNFQAMWDQEAFIDVDGITSNDVAAVLKTYGVEAARNTIVNEINNVFSRY
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Known secondary structure (DSSP)






BTTB
SS

GGGTTTB
TTS
S

T
 .........1340.........1350.........1360.........1370.........1380.........1390.........1400
Sequence AISVSFRHLDLIADMMTRQGTYLAFNRQGMETSTSSFMKMSYETTCQFLTKAVLDNEREQLDSPSARIVV
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Known secondary structure (DSSP) T



TTTSS


SSTS
S
TTS
T



S
 .........1410.........1420
Sequence GKLNNVGTGSFDVLAKVPNA
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Known secondary structure (DSSP) T


SSGGGSS









Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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