PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5l9sA_

Fold library id	PDB Header	Molecule	Title
c5l9sA_	2.49	PDB header: transport protein	Chain: A: PDB Molecule: abc transporter, substrate binding protein (mannopine);

Links to external resources
Added to library: Thu Feb 9 18:03:57 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M E Q R V V I A T T G G T Y E K A L R E A W F E P F T K A T G I K V V T V S G T D A E K R A K V T A M V Q T G N V T W D L Y L D G E I Q A G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T
S S
S T T G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence S D A H F A I T E D L S D F C M Q F I N S T D L L A D S C T R G G A K L Q S T S T L L A Y K L N E N G S N P Q T W A D M W D L A K F P G A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S B
G G G
S
S
B
T T S T T
T T S
S T
T T T S
S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence S F P N F D D P W R V L A A A L L A D G V P R E K L F P L D V D R A F R K L D E L R D S V Q V W W R T G D Q S V Q A F R N D E Y R V G Q I W

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T T
G G G
S
T T T S S T T S
S

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240 . . . . . . . . . 250 . . . . . . . . . 260 . . . . . . . . . 270 . . . . . . . . . 280

Sequence L T R A K A L K A E G Y K I G W S Y D G A F L V G D R I A L V R G A P N R E N A L K L I E F W L R N P A A Q A K A C E T L S C T P P S Q K A

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T
B T T
T T T
T
B
S B

. . . . . . . . . 290 . . . . . . . . . 300 . . . . . . . . . 310 . . . . . . . . . 320 . . . . . .

Sequence I S Q M S S E A R A T L P S A A D V E N R I I V P D A Q W I N A N M G M L V Q R W N S W I R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) S
T T S
T
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	E	Q	R	V	V	I	A	T	T	G	G	T	Y	E	K	A	L	R	E	A	W	F	E	P	F	T	K	A	T	G	I	K	V	V	T	V	S	G	T	D	A	E	K	R	A	K	V	T	A	M	V	Q	T	G	N	V	T	W	D	L	Y	L	D	G	E	I	Q	A	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																						T																																S	S					S						T	T	G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	S	D	A	H	F	A	I	T	E	D	L	S	D	F	C	M	Q	F	I	N	S	T	D	L	L	A	D	S	C	T	R	G	G	A	K	L	Q	S	T	S	T	L	L	A	Y	K	L	N	E	N	G	S	N	P	Q	T	W	A	D	M	W	D	L	A	K	F	P	G	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	S							B								G	G	G		S		S		B		T	T	S			T	T																	T	T	S					S					T		T	T	T	S		S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	S	F	P	N	F	D	D	P	W	R	V	L	A	A	A	L	L	A	D	G	V	P	R	E	K	L	F	P	L	D	V	D	R	A	F	R	K	L	D	E	L	R	D	S	V	Q	V	W	W	R	T	G	D	Q	S	V	Q	A	F	R	N	D	E	Y	R	V	G	Q	I	W
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					S	S													T	T			G	G	G			S														T	T	T						S	S										T	T	S		S
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
Sequence	L	T	R	A	K	A	L	K	A	E	G	Y	K	I	G	W	S	Y	D	G	A	F	L	V	G	D	R	I	A	L	V	R	G	A	P	N	R	E	N	A	L	K	L	I	E	F	W	L	R	N	P	A	A	Q	A	K	A	C	E	T	L	S	C	T	P	P	S	Q	K	A
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										T	T																				B	T	T		T	T													T													T		B		S	B
	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.
Sequence	I	S	Q	M	S	S	E	A	R	A	T	L	P	S	A	A	D	V	E	N	R	I	I	V	P	D	A	Q	W	I	N	A	N	M	G	M	L	V	Q	R	W	N	S	W	I	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				S						T	T	S									T		B