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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c5ko9A_

Fold library idPDB HeaderMoleculeTitle
c5ko9A_1.50PDB header: dna binding proteinChain: A: PDB Molecule: embryonic stem cell-specific 5-hydroxymethylcytosine-


Added to library: Thu Feb 9 14:59:24 2017
 
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 1........10.........20.........30.........40.........50.........60.........70
Sequence CGRTSCHLPRDVLTRACAYQDRRGQQRLPEWRDPDKYCPSYNKSPQSNSPVLLSRLHFEKDADSSERIIA
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Known secondary structure (DSSP)





TT

TT



SSGGG



TTSGGGT
TTS
TTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence PMRWGLVPSWFKESDPSKLQFNTTNCRSDTVMEKRSFKVPLGKGRRCVVLADGFYEWQRCQGTNQRQPYF
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Known secondary structure (DSSP) S


TT

SS
GGG
SS


GGGTTT
TT
S
TT
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence IYFPQIEKVWDNWRLLTMAGIFDCWEPPEGGDVLYSYTIITVDSCKGLSDIHHRMPAILDGEEAVSKWLD
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Known secondary structure (DSSP)




GGGTS




TTS




GGGTTT
S
B

S
 .........220.........230.........240.........250...
Sequence FGEVSTQEALKLIHPTENITFHAVSSVVNNSRNNTPECLAPVA
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Known secondary structure (DSSP) TTTS
TT
S




B
GGGGSTT

SGGGG
B


Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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London
Michael Sternberg

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