PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5jsiA_

Fold library id	PDB Header	Molecule	Title
c5jsiA_	2.00	PDB header: unknown function	Chain: A: PDB Molecule: bacteriorhodopsin;

Links to external resources
Added to library: Sat Jun 3 08:21:58 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence E E L T Y R L F M V A T V G M L A G T V F L L A S S R E V K P E H R R G V Y I S A L V C G I A W Y H Y Q K M G A S W E S G S Y D T G L R Y V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
G G G S
G G G
S S
T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence D W V L T V P L M F V E V L A V T R K G A A Y N E A V R N W G I A A T V M I G A G Y Y G E T S A A G S N E Y W T G F V I A M A T Y V W L M R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T S
T T S

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence N L Q A E G E G L K G D Q A V A F E N I K N L I L V G W I I Y P L G Y I A P V V G D F D A I R E V L Y T I A D I I N V G L G V L V L Q M A R

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T T
T T S

. . . .

Sequence V Q S G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	E	E	L	T	Y	R	L	F	M	V	A	T	V	G	M	L	A	G	T	V	F	L	L	A	S	S	R	E	V	K	P	E	H	R	R	G	V	Y	I	S	A	L	V	C	G	I	A	W	Y	H	Y	Q	K	M	G	A	S	W	E	S	G	S	Y	D	T	G	L	R	Y	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																										G	G	G	S		G	G	G																												S	S			T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	D	W	V	L	T	V	P	L	M	F	V	E	V	L	A	V	T	R	K	G	A	A	Y	N	E	A	V	R	N	W	G	I	A	A	T	V	M	I	G	A	G	Y	Y	G	E	T	S	A	A	G	S	N	E	Y	W	T	G	F	V	I	A	M	A	T	Y	V	W	L	M	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																														T	S		T	T	S
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	N	L	Q	A	E	G	E	G	L	K	G	D	Q	A	V	A	F	E	N	I	K	N	L	I	L	V	G	W	I	I	Y	P	L	G	Y	I	A	P	V	V	G	D	F	D	A	I	R	E	V	L	Y	T	I	A	D	I	I	N	V	G	L	G	V	L	V	L	Q	M	A	R
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)					T	T	T	T																				T	T												S
	.	.	.	.
Sequence	V	Q	S	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			T