PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5jqmB_

Fold library id	PDB Header	Molecule	Title
c5jqmB_	1.50	PDB header: transport protein	Chain: B: PDB Molecule: protein ups1, mitochondrial,mitochondrial distribution and

Links to external resources
Added to library: Sat Jul 15 08:43:02 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence M V L L H K S T H I F P T D F A S V S R A F F N R Y P N P Y S P H V L S I D T I S R N V D Q E G N L R T T R L L K K S G K L P T W V K P F L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S
T
S
T T
T T
T T S
T T S
G G G

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R G I T E T W I I E V S V V N P A N S T M K T Y T R N L D H T G I M K V E E Y T T Y Q F D S A T S S T I A D S R V K F S S G F N M G I K S K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T T T S S S T T T T T T T
S
S T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence V E D W S R T K F D E N V K K S R M G M A F V I Q K L E S A S F A P E C T D L K T K Y D S C F N E W Y S E K F L K G K E C S K Q W Y A Y T T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S T T T T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . .

Sequence C V N A A L V K Q G I K P A L D E A R E E A P F E

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T S T T T
T T

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	M	V	L	L	H	K	S	T	H	I	F	P	T	D	F	A	S	V	S	R	A	F	F	N	R	Y	P	N	P	Y	S	P	H	V	L	S	I	D	T	I	S	R	N	V	D	Q	E	G	N	L	R	T	T	R	L	L	K	K	S	G	K	L	P	T	W	V	K	P	F	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)												S	S											T			S		T	T		T	T													T	T	S																T	T	S		G	G	G
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	G	I	T	E	T	W	I	I	E	V	S	V	V	N	P	A	N	S	T	M	K	T	Y	T	R	N	L	D	H	T	G	I	M	K	V	E	E	Y	T	T	Y	Q	F	D	S	A	T	S	S	T	I	A	D	S	R	V	K	F	S	S	G	F	N	M	G	I	K	S	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)		S														T	T	T	T									S	S	S	T	T	T													T	T	T	T														S		S	T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	V	E	D	W	S	R	T	K	F	D	E	N	V	K	K	S	R	M	G	M	A	F	V	I	Q	K	L	E	S	A	S	F	A	P	E	C	T	D	L	K	T	K	Y	D	S	C	F	N	E	W	Y	S	E	K	F	L	K	G	K	E	C	S	K	Q	W	Y	A	Y	T	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																S	S																					T	T	T	T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
Sequence	C	V	N	A	A	L	V	K	Q	G	I	K	P	A	L	D	E	A	R	E	E	A	P	F	E
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	S	T	T									T			T	T