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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c5jk7C_

Fold library idPDB HeaderMoleculeTitle
c5jk7C_3.49PDB header: viral protein/dna binding proteinChain: C: PDB Molecule: protein vprbp;


Added to library: Thu Feb 9 18:59:52 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence APINFTSRLNRRASFPKYGGVDGGCFDRHLIFSRFRPISVFREANEDESGFTCCAFSARERFLMLGTCTG
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Known secondary structure (DSSP)

SSTTS
SSSSSSTTTT



TT
SS
B
TTSSTTS
 .........80.........90.........100.........110.........120.........130.........140
Sequence QLKLYNVFSGQEEASYNCHNSAITHLEPSRDGSLLLTSATWSQPLSALWGMKSVFDMKHSFTEDHYVEFS
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Known secondary structure (DSSP) TTT



SS



TTSS
SSSSS

SSS

SS
S
 .........150.........160.........170.........180.........190.........200.........210
Sequence KHSQDRVIGTKGDIAHIYDIQTGNKLLTLFNPDLANNYKRNCATFNPTDDLVLNDGVLWDVRSAQAIHKF
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Known secondary structure (DSSP) TTT

TTTTT





TTT



TB



TTSSTTTTTT
 .........220.........230.........240.........250.........260.........270.........280
Sequence DKFNMNISGVFHPNGLEVIINTEIWDLRTFHLLHTVPALDQCRVVFNHTGTVMYGAMLQSPFGSSFRTFN
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Known secondary structure (DSSP)



SSB


TTSS
SS
TTT



GGGTTB


TTS



 .........290.........300.........310.........320.........330.
Sequence ATDYKPIATIDVKRNIFDLCTDTKDCYLAVIENQGSMDALNMDTVCRLYEV
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Known secondary structure (DSSP) SSS


SS
TTS

SS


SSS



Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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Imperial College,
London
Michael Sternberg

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