PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5jefA_

Fold library id	PDB Header	Molecule	Title
c5jefA_	2.42	PDB header: transferase	Chain: A: PDB Molecule: nitrate/nitrite sensor protein narq;

Links to external resources
Added to library: Sat Jun 3 08:49:12 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence V K R P V S A S L A R A F F Y I V L L S I L S T G I A L L T L A S S L R D A E A I N I A G S L R M Q S Y R L G Y D L Q S G S P Q L N A H R Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S
T T T T T
T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence L F Q Q A L H S P V L T N L N V W Y V P E A V K T R Y A H L N A N W L E M N N R L S K G D L P W Y Q A N I N N Y V N Q I D L F V L A L Q H Y

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
T T
S T T S
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A E R K M L L V V A I S L A G G I G I F T L V F F T L R R I R H Q V V A P L N Q L V T A S Q R I E H G F P L D T N L P N E L G L L A K T F N

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T T
S S

. . . . . . . . .

Sequence Q M S S E L H K L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	V	K	R	P	V	S	A	S	L	A	R	A	F	F	Y	I	V	L	L	S	I	L	S	T	G	I	A	L	L	T	L	A	S	S	L	R	D	A	E	A	I	N	I	A	G	S	L	R	M	Q	S	Y	R	L	G	Y	D	L	Q	S	G	S	P	Q	L	N	A	H	R	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			S																														T	T	T	T																									T		T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	L	F	Q	Q	A	L	H	S	P	V	L	T	N	L	N	V	W	Y	V	P	E	A	V	K	T	R	Y	A	H	L	N	A	N	W	L	E	M	N	N	R	L	S	K	G	D	L	P	W	Y	Q	A	N	I	N	N	Y	V	N	Q	I	D	L	F	V	L	A	L	Q	H	Y
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)							T						T	T		S	T	T	S																								T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	E	R	K	M	L	L	V	V	A	I	S	L	A	G	G	I	G	I	F	T	L	V	F	F	T	L	R	R	I	R	H	Q	V	V	A	P	L	N	Q	L	V	T	A	S	Q	R	I	E	H	G	F	P	L	D	T	N	L	P	N	E	L	G	L	L	A	K	T	F	N
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)																																		T															T	T									S	S
	.	.	.	.	.	.	.	.	.
Sequence	Q	M	S	S	E	L	H	K	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)