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  Protein Homology/analogY Recognition Engine V 2.2
 

Fold library entry viewer: c5imyA_

Fold library idPDB HeaderMoleculeTitle
c5imyA_2.40PDB header: toxin/toxin receptorChain: A: PDB Molecule: vaginolysin;


Added to library: Thu Feb 9 15:53:41 2017
 
Links to external resources


 1........10.........20.........30.........40.........50.........60.........70
Sequence TSCAAKKDSLNNYLWDLQYDKTNILARHGETIENKFSSDSFNKNGEFVVVEHQKKNITNTTSNLSVTSAN
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Known secondary structure (DSSP)

SSSTT



TTGGG







SS
S


TTT
 .........80.........90.........100.........110.........120.........130.........140
Sequence DDRVYPGALFRADKNLMDNMPSLISANRAPITLSVDLPGFHGGESAVTVQRPTKSSVTSAVNGLVSKWNA
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Known secondary structure (DSSP) GGG

TT
SSTT


B



B



SS

TTTTSS

 .........150.........160.........170.........180.........190.........200.........210
Sequence QYGASHHVAARMQYDSASAQSMNQLKAKFGADFAKIGVPLKIDFDAVHKGEKQTQIVNFKQTYYTVSVDA
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Known secondary structure (DSSP) TTT


B




TTSGGG


TTS


 .........220.........230.........240.........250.........260.........270.........280
Sequence PDSPADFFAPCTTPDSLKNRGVDNKRPPVYVSNVAYGRSMYVKFDTTSKSTDFQAAVEAAIKGVEIKPNT
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Known secondary structure (DSSP)
SSSS
SB
TT

TTTT
BTTB
S


SST




SSS
 .........290.........300.........310.........320.........330.........340.........350
Sequence EFHRILQNTSVCAVILGGSANGAAKVCTGNIDTLKALIQEGANLSTSSPAVPIAYTTSFVKDNEVATLQS
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Known secondary structure (DSSP) TTTT

SS



SSS



SSB

SSS


TTT

B

 .........360.........370.........380.........390.........400.........410.........420
Sequence NSDYIETKVSSYRNGYLTLDHRGAYVARYYIYWDEYGTEIDGTPYVRSRAWEGNGKYRTAHFNTTIQFKG
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Known secondary structure (DSSP)

S
B


SSS

TT
S

B
S
T
 .........430.........440.........450.........460.........470....
Sequence NVRNLRIKLVEKTGLVWEPWRTVYDRSDLPLVRQRTISNWGTTLWPRVAETVKN
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Known secondary structure (DSSP) T


B

S
TTS

B





STT




Download:PDB structure FASTA sequence

Hidden Markov model

Image coloured by rainbow N → C terminus
Interactive 3D view in JSmol

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Please cite: The Phyre2 web portal for protein modeling, prediction and analysis
Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]
 
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