PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5ikuA_

Fold library id	PDB Header	Molecule	Title
c5ikuA_	1.90	PDB header: protein binding	Chain: A: PDB Molecule: collagenase;

Links to external resources
Added to library: Sat Mar 18 08:31:52 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence G I P G T T T P I T K E M E P N D D I K E A N G P I V E G V T V K G D L N G S D D A D T F Y F D V K E D G D V T I E L P Y S G S S N F T W L

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S B
S
S G G G
B
T T
T T
S S
S

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence V Y K E G D D Q N H I A S G I D K N N S K V G T F K S T K G R H Y V F I Y K H D S A S N I S Y S L N I K G L G N E K L K E K E N N D S S D K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T T B S S S
S
T T
S S
T T
S
S G G G

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence A T V I P N F N T T M Q G S L L G D D S R D Y Y S F E V K E E G E V N I E L D K K D E F G V T W T L H P E S N I N D R I T Y G Q V D G N K V

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S S
T T
S S
S S
T T
T T S
T T

. . . . . . . . . 220 . . . . . . . . . 230 . . . . . . . . . 240

Sequence S N K V K L R P G K Y Y L L V Y K Y S G S G N Y E L R V N K

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S S

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: The Phyre2 web portal for protein modeling, prediction and analysis

Kelley LA et al. Nature Protocols 10, 845-858 (2015) [paper] [Citation link]

© Structural Bioinformatics Group,
Imperial College,
London
Michael Sternberg
Disclaimer

Terms and Conditions

	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	G	I	P	G	T	T	T	P	I	T	K	E	M	E	P	N	D	D	I	K	E	A	N	G	P	I	V	E	G	V	T	V	K	G	D	L	N	G	S	D	D	A	D	T	F	Y	F	D	V	K	E	D	G	D	V	T	I	E	L	P	Y	S	G	S	S	N	F	T	W	L
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)										S	B			S				S	G	G	G		B					T	T									T	T												S	S													S
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	V	Y	K	E	G	D	D	Q	N	H	I	A	S	G	I	D	K	N	N	S	K	V	G	T	F	K	S	T	K	G	R	H	Y	V	F	I	Y	K	H	D	S	A	S	N	I	S	Y	S	L	N	I	K	G	L	G	N	E	K	L	K	E	K	E	N	N	D	S	S	D	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)				T	T	B	S	S	S		S							T	T										S										S		T	T																					S				S	G	G	G
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	A	T	V	I	P	N	F	N	T	T	M	Q	G	S	L	L	G	D	D	S	R	D	Y	Y	S	F	E	V	K	E	E	G	E	V	N	I	E	L	D	K	K	D	E	F	G	V	T	W	T	L	H	P	E	S	N	I	N	D	R	I	T	Y	G	Q	V	D	G	N	K	V
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)						S	S	S									T	T											S	S											S	S											T	T		T	T	S									T	T
	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence	S	N	K	V	K	L	R	P	G	K	Y	Y	L	L	V	Y	K	Y	S	G	S	G	N	Y	E	L	R	V	N	K
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								S												S