PHYRE Protein Fold Recognition Server

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Protein Homology/analogY Recognition Engine V 2.2

Fold library entry viewer: c5ihbB_

Fold library id	PDB Header	Molecule	Title
c5ihbB_	2.24	PDB header: immune system	Chain: B: PDB Molecule: myeloid cell surface antigen cd33;

Links to external resources
Added to library: Sat Apr 1 09:21:26 2017

1 . . . . . . . . 10 . . . . . . . . . 20 . . . . . . . . . 30 . . . . . . . . . 40 . . . . . . . . . 50 . . . . . . . . . 60 . . . . . . . . . 70

Sequence T G F W L Q V Q E S V T V Q E G L C V L V P C T F F H P I P Y Y D K N S P V H G Y W F R E G A I I S G D S P V A T N K L D Q E V Q E E T Q G

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
S T T
G G G T T S
T T
T T T S
S S
T T
T T T T T

. . . . . . . . . 80 . . . . . . . . . 90 . . . . . . . . . 100 . . . . . . . . . 110 . . . . . . . . . 120 . . . . . . . . . 130 . . . . . . . . . 140

Sequence R F R L L G D P S R N N C S L S I V D A R R R D N G S Y F F R M E R G S T K Y S Y K S P Q L S V H V T D L T H R P K I L I P G T L E P G H S

Predicted secondary structure

SS confidence

Known secondary structure (DSSP) T
S
G G G T B
S
G G G
T T
S S
B
T T

. . . . . . . . . 150 . . . . . . . . . 160 . . . . . . . . . 170 . . . . . . . . . 180 . . . . . . . . . 190 . . . . . . . . . 200 . . . . . . . . . 210

Sequence K N L T C S V S W A C E Q G T P P I F S W L S A A P T S L G P R T T H S S V L I I T P R P Q D H G T N L T C Q V K F A G A G V T T E R T I Q

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
T T S
T T S
S S
S S
G G G T T
G G G T

. . . .

Sequence L N V T

Predicted secondary structure

SS confidence

Known secondary structure (DSSP)
B

Download: PDB structure FASTA sequence
Hidden Markov model

Image coloured by rainbow N → C terminus

Interactive 3D view in JSmol

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Accessibility Statement

Please cite: Phyre2.2: A Community Resource for Template-based Protein Structure Prediction

Powell HR et al. Journal of Molecular Biology (2025) in press DOI: https://doi.org/10.1016/j.jmb.2025.168960

© Structural Bioinformatics Group, Imperial College, London

Michael Sternberg

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	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70
Sequence	T	G	F	W	L	Q	V	Q	E	S	V	T	V	Q	E	G	L	C	V	L	V	P	C	T	F	F	H	P	I	P	Y	Y	D	K	N	S	P	V	H	G	Y	W	F	R	E	G	A	I	I	S	G	D	S	P	V	A	T	N	K	L	D	Q	E	V	Q	E	E	T	Q	G
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)									S						T	T															G	G	G	T	T	S									T	T			T	T	T	S			S			S		T	T					T	T	T	T	T
	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Sequence	R	F	R	L	L	G	D	P	S	R	N	N	C	S	L	S	I	V	D	A	R	R	R	D	N	G	S	Y	F	F	R	M	E	R	G	S	T	K	Y	S	Y	K	S	P	Q	L	S	V	H	V	T	D	L	T	H	R	P	K	I	L	I	P	G	T	L	E	P	G	H	S
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)	T					S		G	G	G	T	B							S			G	G	G											T	T																										S	S		B		T	T
	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Sequence	K	N	L	T	C	S	V	S	W	A	C	E	Q	G	T	P	P	I	F	S	W	L	S	A	A	P	T	S	L	G	P	R	T	T	H	S	S	V	L	I	I	T	P	R	P	Q	D	H	G	T	N	L	T	C	Q	V	K	F	A	G	A	G	V	T	T	E	R	T	I	Q
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)								T	T	S		T	T	S										S	S									S	S										G	G	G	T	T										G	G	G	T
	.	.	.	.
Sequence	L	N	V	T
Predicted secondary structure
SS confidence
Known secondary structure (DSSP)			B